RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 KRTAP19-4Q3LI73 84 aa4.55□□□□□ -1.68
LDLR-203ENST00000535915 KRTAP2-3P0C7H8 128 aa4.42□□□□□ -1.7
LDLR-203ENST00000535915 KRTAP2-4Q9BYR9 128 aa4.42□□□□□ -1.7
LDLR-203ENST00000535915 KRTAP2-1Q9BYU5 128 aa4.42□□□□□ -1.7
LDLR-203ENST00000535915 FCGBPQ9Y6R7 5405 aaPredicted RBP4.4□□□□□ -1.71
LDLR-203ENST00000535915 MUC12Q9UKN1 5478 aa4.37□□□□□ -1.71
LDLR-203ENST00000535915 KRTAP4-3Q9BYR4 195 aa4.34□□□□□ -1.72
LDLR-203ENST00000535915 KRTAP19-3Q7Z4W3 81 aa4.31□□□□□ -1.72
LDLR-203ENST00000535915 LOC100996750A0A140TA64 210 aa4.3□□□□□ -1.72
LDLR-203ENST00000535915 MT1MQ8N339 61 aa4.29□□□□□ -1.72
LDLR-203ENST00000535915 MT1GP13640 62 aa4.29□□□□□ -1.72
LDLR-203ENST00000535915 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.27□□□□□ -1.73
LDLR-203ENST00000535915 MACF1Q9UPN3 7388 aaKnown RBP4.24□□□□□ -1.73
LDLR-203ENST00000535915 SPRR2FQ96RM1 72 aa4.2□□□□□ -1.74
LDLR-203ENST00000535915 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
LDLR-203ENST00000535915 KRTAP9-7A8MTY7 169 aa4.17□□□□□ -1.74
LDLR-203ENST00000535915 SYNE2Q8WXH0 6885 aaKnown RBP4.16□□□□□ -1.74
LDLR-203ENST00000535915 LCE5AQ5TCM9 118 aa4.16□□□□□ -1.74
LDLR-203ENST00000535915 KRTAP6-3Q3LI67 103 aa4.04□□□□□ -1.76
LDLR-203ENST00000535915 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
LDLR-203ENST00000535915 MDN1Q9NU22 5596 aa3.99□□□□□ -1.77
LDLR-203ENST00000535915 LCE3BQ5TA77 95 aa3.95□□□□□ -1.78
LDLR-203ENST00000535915 KRTAP5-9P26371 169 aa3.93□□□□□ -1.78
LDLR-203ENST00000535915 LCE1AQ5T7P2 110 aa3.91□□□□□ -1.78
LDLR-203ENST00000535915 KRTAP6-1Q3LI64 71 aa3.88□□□□□ -1.79
LDLR-203ENST00000535915 MT1AP04731 61 aa3.84□□□□□ -1.79
LDLR-203ENST00000535915 SYNE1Q8NF91 8797 aaKnown RBP3.84□□□□□ -1.8
LDLR-203ENST00000535915 SPRR2EP22531 72 aa3.84□□□□□ -1.8
LDLR-203ENST00000535915 SPRR2BP35325 72 aa3.84□□□□□ -1.8
LDLR-203ENST00000535915 SPRR2AP35326 72 aa3.84□□□□□ -1.8
LDLR-203ENST00000535915 KRTAP4-9Q9BYQ8 210 aa3.84□□□□□ -1.8
LDLR-203ENST00000535915 NEBP20929 6669 aa3.83□□□□□ -1.8
LDLR-203ENST00000535915 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
LDLR-203ENST00000535915 LCE3DQ9BYE3 92 aa3.7□□□□□ -1.82
LDLR-203ENST00000535915 SPRR2DP22532 72 aa3.68□□□□□ -1.82
LDLR-203ENST00000535915 KRTAP20-1Q3LI63 56 aa3.67□□□□□ -1.82
LDLR-203ENST00000535915 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
LDLR-203ENST00000535915 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
LDLR-203ENST00000535915 PRM1P04553 51 aa3.61□□□□□ -1.83
LDLR-203ENST00000535915 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
LDLR-203ENST00000535915 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
LDLR-203ENST00000535915 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
LDLR-203ENST00000535915 MT3P25713 68 aa3.46□□□□□ -1.85
LDLR-203ENST00000535915 KRTAP5-4Q6L8H1 288 aa3.35□□□□□ -1.87
LDLR-203ENST00000535915 KRTAP4-6Q9BYQ5 205 aa3.25□□□□□ -1.89
LDLR-203ENST00000535915 MT4P47944 62 aa3.24□□□□□ -1.89
LDLR-203ENST00000535915 LCE4AQ5TA78 99 aa3.24□□□□□ -1.89
LDLR-203ENST00000535915 LCE1DQ5T752 114 aa3.19□□□□□ -1.9
LDLR-203ENST00000535915 KRTAP20-2Q3LI61 65 aa3.17□□□□□ -1.9
LDLR-203ENST00000535915 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
LDLR-203ENST00000535915 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
LDLR-203ENST00000535915 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
LDLR-203ENST00000535915 KRTAP5-3Q6L8H2 238 aa3□□□□□ -1.93
LDLR-203ENST00000535915 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
LDLR-203ENST00000535915 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
LDLR-203ENST00000535915 AHNAK2Q8IVF2 5795 aa2.92□□□□□ -1.94
LDLR-203ENST00000535915 LCE1FQ5T754 118 aa2.85□□□□□ -1.95
LDLR-203ENST00000535915 KRTAP5-10Q6L8G5 202 aa2.83□□□□□ -1.96
LDLR-203ENST00000535915 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
LDLR-203ENST00000535915 KRTAP4-11Q9BYQ6 195 aa2.72□□□□□ -1.97
LDLR-203ENST00000535915 KRTAP5-7Q6L8G8 165 aa2.69□□□□□ -1.98
LDLR-203ENST00000535915 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
LDLR-203ENST00000535915 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
LDLR-203ENST00000535915 KRTAP5-1Q6L8H4 278 aa2.68□□□□□ -1.98
LDLR-203ENST00000535915 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
LDLR-203ENST00000535915 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
LDLR-203ENST00000535915 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
LDLR-203ENST00000535915 KRTAP9-9Q9BYP9 154 aa2.47□□□□□ -2.01
LDLR-203ENST00000535915 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
LDLR-203ENST00000535915 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
LDLR-203ENST00000535915 MUC19Q7Z5P9 8384 aa2.31□□□□□ -2.04
LDLR-203ENST00000535915 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
LDLR-203ENST00000535915 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
LDLR-203ENST00000535915 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
LDLR-203ENST00000535915 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
LDLR-203ENST00000535915 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
LDLR-203ENST00000535915 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 10.3 ms