RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 MT1LQ93083 61 aa4.54□□□□□ -1.68
HDAC4-214ENST00000535493 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
HDAC4-214ENST00000535493 MT1EP04732 61 aa4.51□□□□□ -1.69
HDAC4-214ENST00000535493 KRTAP4-3Q9BYR4 195 aa4.5□□□□□ -1.69
HDAC4-214ENST00000535493 CRCT1Q9UGL9 99 aa4.45□□□□□ -1.7
HDAC4-214ENST00000535493 MT1GP13640 62 aa4.4□□□□□ -1.7
HDAC4-214ENST00000535493 SYNE1Q8NF91 8797 aaKnown RBP4.34□□□□□ -1.71
HDAC4-214ENST00000535493 LCE2DQ5TA82 110 aaPredicted RBP4.29□□□□□ -1.72
HDAC4-214ENST00000535493 KRTAP12-4P60329 112 aa4.26□□□□□ -1.73
HDAC4-214ENST00000535493 MT1MQ8N339 61 aa4.21□□□□□ -1.74
HDAC4-214ENST00000535493 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
HDAC4-214ENST00000535493 KRTAP19-4Q3LI73 84 aa4.2□□□□□ -1.74
HDAC4-214ENST00000535493 KRTAP4-9Q9BYQ8 210 aa4.18□□□□□ -1.74
HDAC4-214ENST00000535493 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.74
HDAC4-214ENST00000535493 KRTAP19-3Q7Z4W3 81 aa4.15□□□□□ -1.74
HDAC4-214ENST00000535493 LCE3BQ5TA77 95 aa4.14□□□□□ -1.75
HDAC4-214ENST00000535493 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
HDAC4-214ENST00000535493 MDN1Q9NU22 5596 aa4.1□□□□□ -1.75
HDAC4-214ENST00000535493 MACF1Q9UPN3 7388 aaKnown RBP4.1□□□□□ -1.75
HDAC4-214ENST00000535493 KRTAP9-2Q9BYQ4 174 aa4.05□□□□□ -1.76
HDAC4-214ENST00000535493 SPRR2FQ96RM1 72 aa4.04□□□□□ -1.76
HDAC4-214ENST00000535493 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
HDAC4-214ENST00000535493 KRTAP6-1Q3LI64 71 aa3.93□□□□□ -1.78
HDAC4-214ENST00000535493 KRTAP9-7A8MTY7 169 aa3.89□□□□□ -1.79
HDAC4-214ENST00000535493 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
HDAC4-214ENST00000535493 KRTAP9-6A0A140TA67 174 aa3.83□□□□□ -1.8
HDAC4-214ENST00000535493 PRM1P04553 51 aa3.8□□□□□ -1.8
HDAC4-214ENST00000535493 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
HDAC4-214ENST00000535493 MT1AP04731 61 aa3.78□□□□□ -1.8
HDAC4-214ENST00000535493 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
HDAC4-214ENST00000535493 LCE1AQ5T7P2 110 aa3.64□□□□□ -1.83
HDAC4-214ENST00000535493 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
HDAC4-214ENST00000535493 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.61□□□□□ -1.83
HDAC4-214ENST00000535493 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
HDAC4-214ENST00000535493 SPRR2EP22531 72 aa3.57□□□□□ -1.84
HDAC4-214ENST00000535493 SPRR2BP35325 72 aa3.57□□□□□ -1.84
HDAC4-214ENST00000535493 SPRR2AP35326 72 aa3.57□□□□□ -1.84
HDAC4-214ENST00000535493 KRTAP9-4Q9BYQ2 154 aa3.52□□□□□ -1.85
HDAC4-214ENST00000535493 KRTAP6-3Q3LI67 103 aa3.46□□□□□ -1.86
HDAC4-214ENST00000535493 SPRR2DP22532 72 aa3.42□□□□□ -1.86
HDAC4-214ENST00000535493 NEBP20929 6669 aa3.38□□□□□ -1.87
HDAC4-214ENST00000535493 MT3P25713 68 aa3.36□□□□□ -1.87
HDAC4-214ENST00000535493 KRTAP2-2Q9BYT5 123 aa3.31□□□□□ -1.88
HDAC4-214ENST00000535493 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.9
HDAC4-214ENST00000535493 MT4P47944 62 aa3.13□□□□□ -1.91
HDAC4-214ENST00000535493 LCE1EQ5T753 118 aa3.08□□□□□ -1.92
HDAC4-214ENST00000535493 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
HDAC4-214ENST00000535493 KRTAP20-1Q3LI63 56 aa3.06□□□□□ -1.92
HDAC4-214ENST00000535493 HMCN1Q96RW7 5635 aa3.03□□□□□ -1.92
HDAC4-214ENST00000535493 KRTAP5-4Q6L8H1 288 aa3.02□□□□□ -1.93
HDAC4-214ENST00000535493 LCE1DQ5T752 114 aa2.96□□□□□ -1.94
HDAC4-214ENST00000535493 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
HDAC4-214ENST00000535493 KRTAP4-11Q9BYQ6 195 aa2.91□□□□□ -1.94
HDAC4-214ENST00000535493 LCE4AQ5TA78 99 aa2.9□□□□□ -1.95
HDAC4-214ENST00000535493 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
HDAC4-214ENST00000535493 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
HDAC4-214ENST00000535493 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
HDAC4-214ENST00000535493 KRTAP5-3Q6L8H2 238 aa2.74□□□□□ -1.97
HDAC4-214ENST00000535493 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
HDAC4-214ENST00000535493 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
HDAC4-214ENST00000535493 KRTAP5-1Q6L8H4 278 aa2.62□□□□□ -1.99
HDAC4-214ENST00000535493 KRTAP9-9Q9BYP9 154 aa2.59□□□□□ -2
HDAC4-214ENST00000535493 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
HDAC4-214ENST00000535493 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
HDAC4-214ENST00000535493 AHNAK2Q8IVF2 5795 aa2.54□□□□□ -2
HDAC4-214ENST00000535493 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
HDAC4-214ENST00000535493 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
HDAC4-214ENST00000535493 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
HDAC4-214ENST00000535493 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
HDAC4-214ENST00000535493 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
HDAC4-214ENST00000535493 KRTAP5-7Q6L8G8 165 aa2.32□□□□□ -2.04
HDAC4-214ENST00000535493 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.3□□□□□ -2.04
HDAC4-214ENST00000535493 KRTAP21-1Q3LI58 79 aa2.29□□□□□ -2.04
HDAC4-214ENST00000535493 KRTAP4-12Q9BQ66 201 aa2.26□□□□□ -2.05
HDAC4-214ENST00000535493 KRTAP5-11Q6L8G4 156 aa2.1□□□□□ -2.07
HDAC4-214ENST00000535493 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.07
HDAC4-214ENST00000535493 PHGR1C9JFL3 82 aa1.86□□□□□ -2.11
HDAC4-214ENST00000535493 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 9.4 ms