RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 M0QZ58 72 aa3.06□□□□□ -1.92
CD44-232ENST00000531118 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
CD44-232ENST00000531118 CHKB-CPT1BH3BT56 60 aa3.04□□□□□ -1.92
CD44-232ENST00000531118 LINC01554Q52M75 96 aa3.03□□□□□ -1.92
CD44-232ENST00000531118 P0C880 135 aa3.01□□□□□ -1.93
CD44-232ENST00000531118 SERP2Q8N6R1 65 aa3.01□□□□□ -1.93
CD44-232ENST00000531118 SPANXA2-OT1Q8N9U9 137 aa3□□□□□ -1.93
CD44-232ENST00000531118 SNURFQ9Y675 71 aa3□□□□□ -1.93
CD44-232ENST00000531118 KRTAP5-1Q6L8H4 278 aa2.99□□□□□ -1.93
CD44-232ENST00000531118 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
CD44-232ENST00000531118 MT1GP13640 62 aa2.98□□□□□ -1.93
CD44-232ENST00000531118 PP632Q6XCG6 107 aa2.97□□□□□ -1.93
CD44-232ENST00000531118 MT1MQ8N339 61 aa2.97□□□□□ -1.93
CD44-232ENST00000531118 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
CD44-232ENST00000531118 MUC5ACP98088 5654 aa2.96□□□□□ -1.94
CD44-232ENST00000531118 COX7CP15954 63 aa2.92□□□□□ -1.94
CD44-232ENST00000531118 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
CD44-232ENST00000531118 SEC61GP60059 68 aa2.91□□□□□ -1.94
CD44-232ENST00000531118 COA5Q86WW8 74 aa2.89□□□□□ -1.95
CD44-232ENST00000531118 SERP1Q9Y6X1 66 aa2.89□□□□□ -1.95
CD44-232ENST00000531118 KRTAP19-5Q3LI72 72 aa2.88□□□□□ -1.95
CD44-232ENST00000531118 MT1LQ93083 61 aa2.87□□□□□ -1.95
CD44-232ENST00000531118 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
CD44-232ENST00000531118 ANAPC13Q9BS18 74 aa2.86□□□□□ -1.95
CD44-232ENST00000531118 H7BZZ5 65 aa2.84□□□□□ -1.95
CD44-232ENST00000531118 CAMK2N1Q7Z7J9 78 aa2.84□□□□□ -1.95
CD44-232ENST00000531118 A0A1B0GU33 70 aa2.8□□□□□ -1.96
CD44-232ENST00000531118 KRTAP13-4Q3LI77 160 aa2.8□□□□□ -1.96
CD44-232ENST00000531118 LCE3AQ5TA76 89 aa2.8□□□□□ -1.96
CD44-232ENST00000531118 A0A1B0GU69 56 aa2.79□□□□□ -1.96
CD44-232ENST00000531118 SYNE1Q8NF91 8797 aaKnown RBP2.78□□□□□ -1.96
CD44-232ENST00000531118 A0A0D9SG42 100 aa2.77□□□□□ -1.97
CD44-232ENST00000531118 ATP5EP56381 51 aaPredicted RBP2.77□□□□□ -1.97
CD44-232ENST00000531118 KRTAP12-4P60329 112 aa2.77□□□□□ -1.97
CD44-232ENST00000531118 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
CD44-232ENST00000531118 SPATA8Q6RVD6 105 aa2.76□□□□□ -1.97
CD44-232ENST00000531118 SPINT4Q6UDR6 99 aa2.76□□□□□ -1.97
CD44-232ENST00000531118 SMIM26A0A096LP01 95 aa2.75□□□□□ -1.97
CD44-232ENST00000531118 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
CD44-232ENST00000531118 PRR15LQ9BU68 103 aa2.75□□□□□ -1.97
CD44-232ENST00000531118 CCDC179H3BU77 68 aa2.73□□□□□ -1.97
CD44-232ENST00000531118 KRTAP12-1P59990 96 aa2.7□□□□□ -1.98
CD44-232ENST00000531118 TMEM258P61165 79 aa2.69□□□□□ -1.98
CD44-232ENST00000531118 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
CD44-232ENST00000531118 LINC01558Q9Y6Z2 57 aa2.66□□□□□ -1.98
CD44-232ENST00000531118 C10orf95Q9H7T3 257 aa2.65□□□□□ -1.99
CD44-232ENST00000531118 UQCR11O14957 56 aa2.64□□□□□ -1.99
CD44-232ENST00000531118 RPS28P62857 69 aaKnown RBP2.64□□□□□ -1.99
CD44-232ENST00000531118 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
CD44-232ENST00000531118 TNP1P09430 55 aa2.62□□□□□ -1.99
CD44-232ENST00000531118 V9GYY9 64 aa2.59□□□□□ -1.99
CD44-232ENST00000531118 K7ERS5 55 aa2.57□□□□□ -2
CD44-232ENST00000531118 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
CD44-232ENST00000531118 PRO0628Q9UI54 55 aa2.56□□□□□ -2
CD44-232ENST00000531118 Q1T7F1 81 aa2.52□□□□□ -2.01
CD44-232ENST00000531118 LCE3DQ9BYE3 92 aa2.52□□□□□ -2.01
CD44-232ENST00000531118 PSPHP1O15172 72 aa2.51□□□□□ -2.01
CD44-232ENST00000531118 KRTAP25-1Q3LHN0 102 aa2.49□□□□□ -2.01
CD44-232ENST00000531118 KRTAP12-3P60328 96 aa2.47□□□□□ -2.01
CD44-232ENST00000531118 A6NED7 52 aa2.46□□□□□ -2.02
CD44-232ENST00000531118 KRTAP6-1Q3LI64 71 aa2.45□□□□□ -2.02
CD44-232ENST00000531118 MT1AP04731 61 aa2.44□□□□□ -2.02
CD44-232ENST00000531118 LCE1CQ5T751 118 aa2.44□□□□□ -2.02
CD44-232ENST00000531118 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
CD44-232ENST00000531118 KRTAP6-2Q3LI66 62 aa2.41□□□□□ -2.02
CD44-232ENST00000531118 BRK1Q8WUW1 75 aa2.4□□□□□ -2.03
CD44-232ENST00000531118 CDC42SE1Q9NRR8 79 aa2.4□□□□□ -2.03
CD44-232ENST00000531118 PMAIP1Q13794 54 aa2.38□□□□□ -2.03
CD44-232ENST00000531118 ROMO1P60602 79 aa2.34□□□□□ -2.03
CD44-232ENST00000531118 KTN1-AS1Q86SY8 53 aa2.34□□□□□ -2.03
CD44-232ENST00000531118 PHGR1C9JFL3 82 aa1.97□□□□□ -2.09
CD44-232ENST00000531118 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
CD44-232ENST00000531118 LUZP6Q538Z0 58 aa1.81□□□□□ -2.12
CD44-232ENST00000531118 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
CD44-232ENST00000531118 INE1O15225 51 aa1.61□□□□□ -2.15
CD44-232ENST00000531118 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
CD44-232ENST00000531118 PRM1P04553 51 aa1.17□□□□□ -2.22
CD44-232ENST00000531118 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 51.1 ms