RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 KRTAP19-6Q3LI70 58 aa6.61□□□□□ -1.35
VPS28-213ENST00000530983 KRTAP9-2Q9BYQ4 174 aa6.49□□□□□ -1.37
VPS28-213ENST00000530983 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
VPS28-213ENST00000530983 FCGBPQ9Y6R7 5405 aaPredicted RBP6.32□□□□□ -1.4
VPS28-213ENST00000530983 KRTAP4-3Q9BYR4 195 aa6.31□□□□□ -1.4
VPS28-213ENST00000530983 LOC100996750A0A140TA64 210 aa6.28□□□□□ -1.4
VPS28-213ENST00000530983 MUC12Q9UKN1 5478 aa6.25□□□□□ -1.41
VPS28-213ENST00000530983 MT1GP13640 62 aa6.22□□□□□ -1.41
VPS28-213ENST00000530983 MT1MQ8N339 61 aa6.21□□□□□ -1.41
VPS28-213ENST00000530983 KRTAP19-3Q7Z4W3 81 aa6.2□□□□□ -1.42
VPS28-213ENST00000530983 CRCT1Q9UGL9 99 aa6.18□□□□□ -1.42
VPS28-213ENST00000530983 KRTAP9-6A0A140TA67 174 aa6.07□□□□□ -1.44
VPS28-213ENST00000530983 LCE5AQ5TCM9 118 aa6□□□□□ -1.45
VPS28-213ENST00000530983 SPRR2FQ96RM1 72 aa5.98□□□□□ -1.45
VPS28-213ENST00000530983 DSTQ03001 7570 aaKnown RBP5.95□□□□□ -1.46
VPS28-213ENST00000530983 KRTAP12-4P60329 112 aa5.92□□□□□ -1.46
VPS28-213ENST00000530983 MACF1Q9UPN3 7388 aaKnown RBP5.9□□□□□ -1.46
VPS28-213ENST00000530983 SYNE2Q8WXH0 6885 aaKnown RBP5.84□□□□□ -1.47
VPS28-213ENST00000530983 LCE3BQ5TA77 95 aa5.75□□□□□ -1.49
VPS28-213ENST00000530983 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.75□□□□□ -1.49
VPS28-213ENST00000530983 KRTAP6-1Q3LI64 71 aa5.66□□□□□ -1.5
VPS28-213ENST00000530983 KRTAP5-9P26371 169 aa5.65□□□□□ -1.5
VPS28-213ENST00000530983 KRTAP4-9Q9BYQ8 210 aa5.65□□□□□ -1.5
VPS28-213ENST00000530983 MDN1Q9NU22 5596 aa5.65□□□□□ -1.51
VPS28-213ENST00000530983 MT1AP04731 61 aa5.6□□□□□ -1.51
VPS28-213ENST00000530983 LCE1AQ5T7P2 110 aa5.6□□□□□ -1.51
VPS28-213ENST00000530983 KRTAP9-7A8MTY7 169 aa5.53□□□□□ -1.52
VPS28-213ENST00000530983 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
VPS28-213ENST00000530983 KRTAP5-5Q701N2 237 aaPredicted RBP5.51□□□□□ -1.53
VPS28-213ENST00000530983 SPRR2EP22531 72 aa5.48□□□□□ -1.53
VPS28-213ENST00000530983 SPRR2BP35325 72 aa5.48□□□□□ -1.53
VPS28-213ENST00000530983 SPRR2AP35326 72 aa5.48□□□□□ -1.53
VPS28-213ENST00000530983 KRTAP6-3Q3LI67 103 aa5.44□□□□□ -1.54
VPS28-213ENST00000530983 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
VPS28-213ENST00000530983 LCE3EQ5T5B0 92 aa5.37□□□□□ -1.55
VPS28-213ENST00000530983 PRM1P04553 51 aa5.29□□□□□ -1.56
VPS28-213ENST00000530983 SPRR2DP22532 72 aa5.26□□□□□ -1.57
VPS28-213ENST00000530983 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
VPS28-213ENST00000530983 NEBP20929 6669 aa5.21□□□□□ -1.58
VPS28-213ENST00000530983 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
VPS28-213ENST00000530983 MT3P25713 68 aa5□□□□□ -1.61
VPS28-213ENST00000530983 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
VPS28-213ENST00000530983 KRTAP5-4Q6L8H1 288 aa4.88□□□□□ -1.63
VPS28-213ENST00000530983 KRTAP20-1Q3LI63 56 aa4.85□□□□□ -1.63
VPS28-213ENST00000530983 KRTAP2-2Q9BYT5 123 aa4.71□□□□□ -1.66
VPS28-213ENST00000530983 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
VPS28-213ENST00000530983 KRTAP4-6Q9BYQ5 205 aa4.62□□□□□ -1.67
VPS28-213ENST00000530983 MT4P47944 62 aa4.58□□□□□ -1.68
VPS28-213ENST00000530983 KRTAP20-2Q3LI61 65 aa4.55□□□□□ -1.68
VPS28-213ENST00000530983 KRTAP5-2Q701N4 177 aa4.54□□□□□ -1.68
VPS28-213ENST00000530983 LCE1DQ5T752 114 aa4.4□□□□□ -1.71
VPS28-213ENST00000530983 HMCN1Q96RW7 5635 aa4.37□□□□□ -1.71
VPS28-213ENST00000530983 KRTAP5-3Q6L8H2 238 aa4.34□□□□□ -1.71
VPS28-213ENST00000530983 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
VPS28-213ENST00000530983 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
VPS28-213ENST00000530983 LCE1BQ5T7P3 118 aa4.02□□□□□ -1.77
VPS28-213ENST00000530983 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
VPS28-213ENST00000530983 KRTAP4-11Q9BYQ6 195 aa3.98□□□□□ -1.77
VPS28-213ENST00000530983 KRTAP5-1Q6L8H4 278 aa3.95□□□□□ -1.78
VPS28-213ENST00000530983 AHNAK2Q8IVF2 5795 aa3.93□□□□□ -1.78
VPS28-213ENST00000530983 KRTAP4-2Q9BYR5 136 aa3.89□□□□□ -1.79
VPS28-213ENST00000530983 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
VPS28-213ENST00000530983 GPR98Q8WXG9 6306 aa3.83□□□□□ -1.8
VPS28-213ENST00000530983 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
VPS28-213ENST00000530983 KRTAP21-2Q3LI59 83 aa3.66□□□□□ -1.82
VPS28-213ENST00000530983 KRTAP5-8O75690 187 aa3.62□□□□□ -1.83
VPS28-213ENST00000530983 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
VPS28-213ENST00000530983 KRTAP21-1Q3LI58 79 aa3.39□□□□□ -1.87
VPS28-213ENST00000530983 KRTAP5-11Q6L8G4 156 aa3.36□□□□□ -1.87
VPS28-213ENST00000530983 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
VPS28-213ENST00000530983 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
VPS28-213ENST00000530983 MUC5BQ9HC84 5762 aaPredicted RBP3.22□□□□□ -1.89
VPS28-213ENST00000530983 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
VPS28-213ENST00000530983 KRTAP4-12Q9BQ66 201 aa3.11□□□□□ -1.91
VPS28-213ENST00000530983 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
VPS28-213ENST00000530983 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
VPS28-213ENST00000530983 PHGR1C9JFL3 82 aa2.88□□□□□ -1.95
VPS28-213ENST00000530983 MUC16Q8WXI7 14507 aa1.89□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 13.7 ms