RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KRTAP4-7Q9BYR0 210 aa7.33□□□□□ -1.24
VPS28-205ENST00000526204 CRCT1Q9UGL9 99 aa7.3□□□□□ -1.24
VPS28-205ENST00000526204 FCGBPQ9Y6R7 5405 aaPredicted RBP7.24□□□□□ -1.25
VPS28-205ENST00000526204 KRTAP2-3P0C7H8 128 aa7.21□□□□□ -1.25
VPS28-205ENST00000526204 KRTAP2-4Q9BYR9 128 aa7.21□□□□□ -1.25
VPS28-205ENST00000526204 KRTAP2-1Q9BYU5 128 aa7.21□□□□□ -1.25
VPS28-205ENST00000526204 MT1GP13640 62 aa6.97□□□□□ -1.29
VPS28-205ENST00000526204 KRTAP19-3Q7Z4W3 81 aa6.97□□□□□ -1.29
VPS28-205ENST00000526204 MACF1Q9UPN3 7388 aaKnown RBP6.93□□□□□ -1.3
VPS28-205ENST00000526204 MT1MQ8N339 61 aa6.92□□□□□ -1.3
VPS28-205ENST00000526204 KRTAP4-3Q9BYR4 195 aa6.89□□□□□ -1.31
VPS28-205ENST00000526204 MUC12Q9UKN1 5478 aa6.87□□□□□ -1.31
VPS28-205ENST00000526204 LOC100996750A0A140TA64 210 aa6.84□□□□□ -1.31
VPS28-205ENST00000526204 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.77□□□□□ -1.33
VPS28-205ENST00000526204 SYNE2Q8WXH0 6885 aaKnown RBP6.76□□□□□ -1.33
VPS28-205ENST00000526204 LCE5AQ5TCM9 118 aa6.74□□□□□ -1.33
VPS28-205ENST00000526204 SPRR2FQ96RM1 72 aa6.72□□□□□ -1.33
VPS28-205ENST00000526204 KRTAP9-7A8MTY7 169 aa6.6□□□□□ -1.35
VPS28-205ENST00000526204 MDN1Q9NU22 5596 aa6.51□□□□□ -1.37
VPS28-205ENST00000526204 KRTAP5-9P26371 169 aa6.5□□□□□ -1.37
VPS28-205ENST00000526204 KRTAP6-3Q3LI67 103 aa6.5□□□□□ -1.37
VPS28-205ENST00000526204 DSTQ03001 7570 aaKnown RBP6.45□□□□□ -1.38
VPS28-205ENST00000526204 LCE1AQ5T7P2 110 aa6.37□□□□□ -1.39
VPS28-205ENST00000526204 KRTAP12-4P60329 112 aa6.32□□□□□ -1.4
VPS28-205ENST00000526204 LCE3BQ5TA77 95 aa6.29□□□□□ -1.4
VPS28-205ENST00000526204 SPRR2EP22531 72 aa6.28□□□□□ -1.4
VPS28-205ENST00000526204 SPRR2BP35325 72 aa6.28□□□□□ -1.4
VPS28-205ENST00000526204 SPRR2AP35326 72 aa6.28□□□□□ -1.4
VPS28-205ENST00000526204 MT1AP04731 61 aa6.25□□□□□ -1.41
VPS28-205ENST00000526204 KRTAP6-1Q3LI64 71 aa6.23□□□□□ -1.41
VPS28-205ENST00000526204 KRTAP5-5Q701N2 237 aaPredicted RBP6.14□□□□□ -1.43
VPS28-205ENST00000526204 NEBP20929 6669 aa6.11□□□□□ -1.43
VPS28-205ENST00000526204 KRTAP4-9Q9BYQ8 210 aa6.08□□□□□ -1.44
VPS28-205ENST00000526204 SPRR2DP22532 72 aa6.04□□□□□ -1.44
VPS28-205ENST00000526204 LCE3DQ9BYE3 92 aa5.99□□□□□ -1.45
VPS28-205ENST00000526204 LCE3EQ5T5B0 92 aa5.91□□□□□ -1.46
VPS28-205ENST00000526204 KRTAP9-4Q9BYQ2 154 aa5.88□□□□□ -1.47
VPS28-205ENST00000526204 SYNE1Q8NF91 8797 aaKnown RBP5.87□□□□□ -1.47
VPS28-205ENST00000526204 KRTAP20-1Q3LI63 56 aa5.78□□□□□ -1.48
VPS28-205ENST00000526204 MT3P25713 68 aa5.64□□□□□ -1.51
VPS28-205ENST00000526204 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
VPS28-205ENST00000526204 KRTAP6-2Q3LI66 62 aa5.61□□□□□ -1.51
VPS28-205ENST00000526204 PRM1P04553 51 aa5.55□□□□□ -1.52
VPS28-205ENST00000526204 KRTAP5-4Q6L8H1 288 aa5.48□□□□□ -1.53
VPS28-205ENST00000526204 MT4P47944 62 aa5.3□□□□□ -1.56
VPS28-205ENST00000526204 KRTAP4-6Q9BYQ5 205 aa5.3□□□□□ -1.56
VPS28-205ENST00000526204 LCE4AQ5TA78 99 aa5.28□□□□□ -1.56
VPS28-205ENST00000526204 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
VPS28-205ENST00000526204 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
VPS28-205ENST00000526204 KRTAP20-2Q3LI61 65 aa5.14□□□□□ -1.59
VPS28-205ENST00000526204 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
VPS28-205ENST00000526204 KRTAP5-2Q701N4 177 aa5.1□□□□□ -1.59
VPS28-205ENST00000526204 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
VPS28-205ENST00000526204 KRTAP5-3Q6L8H2 238 aa4.94□□□□□ -1.62
VPS28-205ENST00000526204 LCE1EQ5T753 118 aa4.67□□□□□ -1.66
VPS28-205ENST00000526204 AHNAK2Q8IVF2 5795 aa4.66□□□□□ -1.66
VPS28-205ENST00000526204 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
VPS28-205ENST00000526204 KRTAP5-10Q6L8G5 202 aa4.54□□□□□ -1.68
VPS28-205ENST00000526204 LCE1BQ5T7P3 118 aa4.47□□□□□ -1.69
VPS28-205ENST00000526204 KRTAP5-7Q6L8G8 165 aa4.42□□□□□ -1.7
VPS28-205ENST00000526204 KRTAP4-11Q9BYQ6 195 aa4.41□□□□□ -1.7
VPS28-205ENST00000526204 LCE1CQ5T751 118 aa4.39□□□□□ -1.71
VPS28-205ENST00000526204 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
VPS28-205ENST00000526204 KRTAP4-2Q9BYR5 136 aa4.34□□□□□ -1.71
VPS28-205ENST00000526204 KRTAP5-8O75690 187 aa4.24□□□□□ -1.73
VPS28-205ENST00000526204 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.15□□□□□ -1.74
VPS28-205ENST00000526204 KRTAP21-2Q3LI59 83 aa4.04□□□□□ -1.76
VPS28-205ENST00000526204 KRTAP9-9Q9BYP9 154 aa3.91□□□□□ -1.78
VPS28-205ENST00000526204 AHNAKQ09666 5890 aaKnown RBP3.89□□□□□ -1.79
VPS28-205ENST00000526204 MUC5BQ9HC84 5762 aaPredicted RBP3.8□□□□□ -1.8
VPS28-205ENST00000526204 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
VPS28-205ENST00000526204 KRTAP4-4Q9BYR3 166 aa3.6□□□□□ -1.83
VPS28-205ENST00000526204 KRTAP21-1Q3LI58 79 aa3.52□□□□□ -1.85
VPS28-205ENST00000526204 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
VPS28-205ENST00000526204 PHGR1C9JFL3 82 aa3.25□□□□□ -1.89
VPS28-205ENST00000526204 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
VPS28-205ENST00000526204 MUC19Q7Z5P9 8384 aa3.22□□□□□ -1.89
VPS28-205ENST00000526204 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 33.2 ms