RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 KIAA1109Q2LD37 5005 aa1.96□□□□□ -2.1
SKP1-213ENST00000524288 KRTAP4-1Q9BYQ7 146 aa1.96□□□□□ -2.1
SKP1-213ENST00000524288 HERC2O95714 4834 aa1.96□□□□□ -2.1
SKP1-213ENST00000524288 M0QZ58 72 aa1.93□□□□□ -2.1
SKP1-213ENST00000524288 CRIPTQ9P021 101 aa1.93□□□□□ -2.1
SKP1-213ENST00000524288 A0A0D9SG42 100 aa1.92□□□□□ -2.1
SKP1-213ENST00000524288 C10orf95Q9H7T3 257 aa1.91□□□□□ -2.1
SKP1-213ENST00000524288 DMBT1Q9UGM3 2413 aaPredicted RBP1.91□□□□□ -2.1
SKP1-213ENST00000524288 MYCBP2O75592 4640 aa1.9□□□□□ -2.1
SKP1-213ENST00000524288 FCGBPQ9Y6R7 5405 aaPredicted RBP1.88□□□□□ -2.11
SKP1-213ENST00000524288 ABCA13Q86UQ4 5058 aa1.87□□□□□ -2.11
SKP1-213ENST00000524288 PCLOQ9Y6V0 5065 aa1.84□□□□□ -2.11
SKP1-213ENST00000524288 FLGP20930 4061 aaPredicted RBP1.81□□□□□ -2.12
SKP1-213ENST00000524288 PLAC4Q8WY50 150 aa1.8□□□□□ -2.12
SKP1-213ENST00000524288 KRTAP19-2Q3LHN2 52 aa1.79□□□□□ -2.12
SKP1-213ENST00000524288 MUC17Q685J3 4493 aa1.78□□□□□ -2.12
SKP1-213ENST00000524288 HERC1Q15751 4861 aa1.78□□□□□ -2.12
SKP1-213ENST00000524288 LRP2P98164 4655 aa1.76□□□□□ -2.13
SKP1-213ENST00000524288 HMCN2Q8NDA2 5059 aa1.75□□□□□ -2.13
SKP1-213ENST00000524288 INE1O15225 51 aa1.74□□□□□ -2.13
SKP1-213ENST00000524288 LPAP08519 4548 aa1.73□□□□□ -2.13
SKP1-213ENST00000524288 TNP1P09430 55 aa1.71□□□□□ -2.14
SKP1-213ENST00000524288 M0R2T5 61 aa1.7□□□□□ -2.14
SKP1-213ENST00000524288 MT1HP80294 61 aa1.69□□□□□ -2.14
SKP1-213ENST00000524288 RNF213Q63HN8 5207 aa1.68□□□□□ -2.14
SKP1-213ENST00000524288 SPRR2GQ9BYE4 73 aa1.66□□□□□ -2.14
SKP1-213ENST00000524288 UBR4Q5T4S7 5183 aa1.64□□□□□ -2.15
SKP1-213ENST00000524288 KRTAP8-1Q8IUC2 63 aa1.62□□□□□ -2.15
SKP1-213ENST00000524288 MT2AP02795 61 aa1.6□□□□□ -2.15
SKP1-213ENST00000524288 KRTAP19-8Q3LI54 63 aa1.6□□□□□ -2.15
SKP1-213ENST00000524288 FAT4Q6V0I7 4981 aa1.6□□□□□ -2.15
SKP1-213ENST00000524288 MT1FP04733 61 aa1.58□□□□□ -2.16
SKP1-213ENST00000524288 MUC2Q02817 5179 aa1.57□□□□□ -2.16
SKP1-213ENST00000524288 MT1XP80297 61 aa1.54□□□□□ -2.16
SKP1-213ENST00000524288 MT1BP07438 61 aa1.53□□□□□ -2.16
SKP1-213ENST00000524288 KRTAP19-6Q3LI70 58 aa1.48□□□□□ -2.17
SKP1-213ENST00000524288 KRTAP2-3P0C7H8 128 aa1.43□□□□□ -2.18
SKP1-213ENST00000524288 KRTAP2-4Q9BYR9 128 aa1.43□□□□□ -2.18
SKP1-213ENST00000524288 KRTAP2-1Q9BYU5 128 aa1.43□□□□□ -2.18
SKP1-213ENST00000524288 KRTAP19-5Q3LI72 72 aa1.42□□□□□ -2.18
SKP1-213ENST00000524288 USH2AO75445 5202 aa1.41□□□□□ -2.18
SKP1-213ENST00000524288 KRTAP19-7Q3SYF9 63 aa1.37□□□□□ -2.19
SKP1-213ENST00000524288 GPR98Q8WXG9 6306 aa1.35□□□□□ -2.19
SKP1-213ENST00000524288 SSPOA2VEC9 5147 aa1.35□□□□□ -2.19
SKP1-213ENST00000524288 MT1LQ93083 61 aa1.34□□□□□ -2.19
SKP1-213ENST00000524288 FSIP2Q5CZC0 6907 aa1.34□□□□□ -2.2
SKP1-213ENST00000524288 MT1EP04732 61 aa1.33□□□□□ -2.2
SKP1-213ENST00000524288 MACF1Q9UPN3 7388 aaKnown RBP1.29□□□□□ -2.2
SKP1-213ENST00000524288 SPRR2FQ96RM1 72 aa1.28□□□□□ -2.2
SKP1-213ENST00000524288 SPRR2EP22531 72 aa1.25□□□□□ -2.21
SKP1-213ENST00000524288 SPRR2BP35325 72 aa1.25□□□□□ -2.21
SKP1-213ENST00000524288 SPRR2AP35326 72 aa1.25□□□□□ -2.21
SKP1-213ENST00000524288 MT1GP13640 62 aa1.24□□□□□ -2.21
SKP1-213ENST00000524288 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
SKP1-213ENST00000524288 MT1MQ8N339 61 aa1.24□□□□□ -2.21
SKP1-213ENST00000524288 KRTAP19-3Q7Z4W3 81 aa1.23□□□□□ -2.21
SKP1-213ENST00000524288 MT1AP04731 61 aa1.21□□□□□ -2.22
SKP1-213ENST00000524288 KMT2DO14686 5537 aa1.2□□□□□ -2.22
SKP1-213ENST00000524288 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
SKP1-213ENST00000524288 SYNE2Q8WXH0 6885 aaKnown RBP1.2□□□□□ -2.22
SKP1-213ENST00000524288 SPRR2DP22532 72 aa1.2□□□□□ -2.22
SKP1-213ENST00000524288 KRTAP20-1Q3LI63 56 aa1.18□□□□□ -2.22
SKP1-213ENST00000524288 NEBP20929 6669 aa1.16□□□□□ -2.22
SKP1-213ENST00000524288 MUC12Q9UKN1 5478 aa1.14□□□□□ -2.23
SKP1-213ENST00000524288 AHNAK2Q8IVF2 5795 aa1.12□□□□□ -2.23
SKP1-213ENST00000524288 MDN1Q9NU22 5596 aa1.11□□□□□ -2.23
SKP1-213ENST00000524288 KRTAP6-1Q3LI64 71 aa1.11□□□□□ -2.23
SKP1-213ENST00000524288 DSTQ03001 7570 aaKnown RBP1.1□□□□□ -2.23
SKP1-213ENST00000524288 AHNAKQ09666 5890 aaKnown RBP1.08□□□□□ -2.24
SKP1-213ENST00000524288 PRM1P04553 51 aa1.07□□□□□ -2.24
SKP1-213ENST00000524288 MT4P47944 62 aa1.04□□□□□ -2.24
SKP1-213ENST00000524288 KRTAP6-2Q3LI66 62 aa1.04□□□□□ -2.24
SKP1-213ENST00000524288 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
SKP1-213ENST00000524288 KRTAP20-2Q3LI61 65 aa1□□□□□ -2.25
SKP1-213ENST00000524288 SYNE1Q8NF91 8797 aaKnown RBP0.99□□□□□ -2.25
SKP1-213ENST00000524288 MUC5ACP98088 5654 aa0.84□□□□□ -2.27
SKP1-213ENST00000524288 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.28
SKP1-213ENST00000524288 PHGR1C9JFL3 82 aa0.62□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 76.6 ms