RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 KRTAP4-9Q9BYQ8 210 aa10.42□□□□□ -0.74
SYNPO-203ENST00000518872 LCE4AQ5TA78 99 aa10.29□□□□□ -0.76
SYNPO-203ENST00000518872 LCE1DQ5T752 114 aa10.24□□□□□ -0.77
SYNPO-203ENST00000518872 KRTAP4-3Q9BYR4 195 aa10.22□□□□□ -0.77
SYNPO-203ENST00000518872 KRTAP12-3P60328 96 aa10.21□□□□□ -0.77
SYNPO-203ENST00000518872 MIR22HGQ0VDD5 57 aa10.15□□□□□ -0.78
SYNPO-203ENST00000518872 KRTAP5-4Q6L8H1 288 aa10.12□□□□□ -0.79
SYNPO-203ENST00000518872 MT4P47944 62 aa10.07□□□□□ -0.8
SYNPO-203ENST00000518872 KRTAP25-1Q3LHN0 102 aa10.07□□□□□ -0.8
SYNPO-203ENST00000518872 HMCN1Q96RW7 5635 aa10.04□□□□□ -0.8
SYNPO-203ENST00000518872 V9GYY9 64 aa10.02□□□□□ -0.81
SYNPO-203ENST00000518872 K7ERS5 55 aa9.98□□□□□ -0.81
SYNPO-203ENST00000518872 KRTAP4-7Q9BYR0 210 aa9.98□□□□□ -0.81
SYNPO-203ENST00000518872 Q1T7F1 81 aa9.93□□□□□ -0.82
SYNPO-203ENST00000518872 PCP4P48539 62 aa9.9□□□□□ -0.82
SYNPO-203ENST00000518872 PSPHP1O15172 72 aa9.89□□□□□ -0.83
SYNPO-203ENST00000518872 KRTAP4-6Q9BYQ5 205 aa9.82□□□□□ -0.84
SYNPO-203ENST00000518872 KRTAP19-4Q3LI73 84 aa9.77□□□□□ -0.85
SYNPO-203ENST00000518872 KRTAP23-1A1A580 65 aa9.76□□□□□ -0.85
SYNPO-203ENST00000518872 AHNAK2Q8IVF2 5795 aa9.75□□□□□ -0.85
SYNPO-203ENST00000518872 KRTAP5-5Q701N2 237 aaPredicted RBP9.71□□□□□ -0.86
SYNPO-203ENST00000518872 RPS28P62857 69 aaKnown RBP9.63□□□□□ -0.87
SYNPO-203ENST00000518872 KRTAP5-10Q6L8G5 202 aa9.59□□□□□ -0.87
SYNPO-203ENST00000518872 A6NED7 52 aa9.57□□□□□ -0.88
SYNPO-203ENST00000518872 KRTAP15-1Q3LI76 137 aa9.54□□□□□ -0.88
SYNPO-203ENST00000518872 SPRR5A0A1B0GTR4 108 aa9.51□□□□□ -0.89
SYNPO-203ENST00000518872 KRTAP20-2Q3LI61 65 aa9.51□□□□□ -0.89
SYNPO-203ENST00000518872 LOC100996750A0A140TA64 210 aa9.46□□□□□ -0.9
SYNPO-203ENST00000518872 CDC42SE1Q9NRR8 79 aa9.45□□□□□ -0.9
SYNPO-203ENST00000518872 KRTAP12-4P60329 112 aa9.42□□□□□ -0.9
SYNPO-203ENST00000518872 LCE3CQ5T5A8 94 aa9.4□□□□□ -0.9
SYNPO-203ENST00000518872 SYNE1Q8NF91 8797 aaKnown RBP9.34□□□□□ -0.91
SYNPO-203ENST00000518872 KRTAP5-3Q6L8H2 238 aa9.34□□□□□ -0.91
SYNPO-203ENST00000518872 ROMO1P60602 79 aa9.29□□□□□ -0.92
SYNPO-203ENST00000518872 KRTAP5-7Q6L8G8 165 aa9.27□□□□□ -0.93
SYNPO-203ENST00000518872 MT1AP04731 61 aa9.02□□□□□ -0.97
SYNPO-203ENST00000518872 KRTAP6-1Q3LI64 71 aa8.93□□□□□ -0.98
SYNPO-203ENST00000518872 KRTAP5-2Q701N4 177 aa8.87□□□□□ -0.99
SYNPO-203ENST00000518872 KRTAP9-6A8MVA2 160 aa8.86□□□□□ -0.99
SYNPO-203ENST00000518872 KRTAP9-4Q9BYQ2 154 aa8.7□□□□□ -1.02
SYNPO-203ENST00000518872 KRTAP4-11Q9BYQ6 195 aa8.69□□□□□ -1.02
SYNPO-203ENST00000518872 KRTAP6-2Q3LI66 62 aa8.52□□□□□ -1.05
SYNPO-203ENST00000518872 BRK1Q8WUW1 75 aa8.49□□□□□ -1.05
SYNPO-203ENST00000518872 KRTAP5-8O75690 187 aa8.41□□□□□ -1.06
SYNPO-203ENST00000518872 OBSCNQ5VST9 7968 aa8.24□□□□□ -1.09
SYNPO-203ENST00000518872 MT3P25713 68 aa8.24□□□□□ -1.09
SYNPO-203ENST00000518872 AHNAKQ09666 5890 aaKnown RBP8.15□□□□□ -1.1
SYNPO-203ENST00000518872 MUC5BQ9HC84 5762 aaPredicted RBP8.11□□□□□ -1.11
SYNPO-203ENST00000518872 MUC5ACP98088 5654 aa8.1□□□□□ -1.11
SYNPO-203ENST00000518872 PMAIP1Q13794 54 aa8□□□□□ -1.13
SYNPO-203ENST00000518872 KRTAP9-9Q9BYP9 154 aa7.95□□□□□ -1.14
SYNPO-203ENST00000518872 KRTAP5-1Q6L8H4 278 aa7.93□□□□□ -1.14
SYNPO-203ENST00000518872 PRO0628Q9UI54 55 aa7.76□□□□□ -1.17
SYNPO-203ENST00000518872 LCE1EQ5T753 118 aa7.63□□□□□ -1.19
SYNPO-203ENST00000518872 PRAC1Q96KF2 57 aa7.62□□□□□ -1.19
SYNPO-203ENST00000518872 KTN1-AS1Q86SY8 53 aa7.33□□□□□ -1.24
SYNPO-203ENST00000518872 KRTAP4-2Q9BYR5 136 aa7.17□□□□□ -1.26
SYNPO-203ENST00000518872 LCE1CQ5T751 118 aa7.07□□□□□ -1.28
SYNPO-203ENST00000518872 LCE1BQ5T7P3 118 aa7.07□□□□□ -1.28
SYNPO-203ENST00000518872 SVIPQ8NHG7 77 aa6.94□□□□□ -1.3
SYNPO-203ENST00000518872 LCE3DQ9BYE3 92 aa6.76□□□□□ -1.33
SYNPO-203ENST00000518872 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.47□□□□□ -1.37
SYNPO-203ENST00000518872 KRTAP5-11Q6L8G4 156 aa6.42□□□□□ -1.38
SYNPO-203ENST00000518872 KRTAP4-12Q9BQ66 201 aa6.4□□□□□ -1.38
SYNPO-203ENST00000518872 LCE3EQ5T5B0 92 aa6.36□□□□□ -1.39
SYNPO-203ENST00000518872 LUZP6Q538Z0 58 aa6.35□□□□□ -1.39
SYNPO-203ENST00000518872 LCE1FQ5T754 118 aa6.26□□□□□ -1.41
SYNPO-203ENST00000518872 KRTAP21-2Q3LI59 83 aa5.91□□□□□ -1.46
SYNPO-203ENST00000518872 PHGR1C9JFL3 82 aa5.56□□□□□ -1.52
SYNPO-203ENST00000518872 NDUFAF8A1L188 74 aa5.47□□□□□ -1.53
SYNPO-203ENST00000518872 KRTAP4-4Q9BYR3 166 aa5.32□□□□□ -1.56
SYNPO-203ENST00000518872 MUC19Q7Z5P9 8384 aa5.09□□□□□ -1.59
SYNPO-203ENST00000518872 PRM1P04553 51 aa4.72□□□□□ -1.65
SYNPO-203ENST00000518872 A0A0A0MQY5 61 aa4.49□□□□□ -1.69
SYNPO-203ENST00000518872 INE1O15225 51 aa4.47□□□□□ -1.69
SYNPO-203ENST00000518872 H3BS24 57 aa4.39□□□□□ -1.71
SYNPO-203ENST00000518872 KRTAP21-1Q3LI58 79 aa4.23□□□□□ -1.73
SYNPO-203ENST00000518872 MUC16Q8WXI7 14507 aa3.65□□□□□ -1.82
Retrieved 78 of 20,778 RNA–protein pairs in 53.5 ms