RNA–Protein interactions for RNA: ENST00000518385.5

SDC2-202, Transcript of syndecan 2, humanhuman

TSL 5 BASIC

Gene SDC2, Length 1,583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-202ENST00000518385 LCE3CQ5T5A8 94 aa6.69□□□□□ -1.34
SDC2-202ENST00000518385 MACF1Q9UPN3 7388 aaKnown RBP6.63□□□□□ -1.35
SDC2-202ENST00000518385 KRTAP9-9Q9BYP9 154 aa6.62□□□□□ -1.35
SDC2-202ENST00000518385 KRTAP9-4Q9BYQ2 154 aa6.62□□□□□ -1.35
SDC2-202ENST00000518385 KRTAP4-12Q9BQ66 201 aa6.61□□□□□ -1.35
SDC2-202ENST00000518385 KRTAP19-7Q3SYF9 63 aa6.59□□□□□ -1.35
SDC2-202ENST00000518385 MT1EP04732 61 aa6.47□□□□□ -1.37
SDC2-202ENST00000518385 SYNE2Q8WXH0 6885 aaKnown RBP6.44□□□□□ -1.38
SDC2-202ENST00000518385 KRTAP4-7Q9BYR0 210 aa6.42□□□□□ -1.38
SDC2-202ENST00000518385 KRTAP2-3P0C7H8 128 aa6.39□□□□□ -1.39
SDC2-202ENST00000518385 KRTAP2-4Q9BYR9 128 aa6.39□□□□□ -1.39
SDC2-202ENST00000518385 KRTAP2-1Q9BYU5 128 aa6.39□□□□□ -1.39
SDC2-202ENST00000518385 MT1LQ93083 61 aa6.38□□□□□ -1.39
SDC2-202ENST00000518385 KRTAP5-9P26371 169 aa6.37□□□□□ -1.39
SDC2-202ENST00000518385 SPRR2FQ96RM1 72 aa6.37□□□□□ -1.39
SDC2-202ENST00000518385 KRTAP6-3Q3LI67 103 aa6.32□□□□□ -1.4
SDC2-202ENST00000518385 LCE1DQ5T752 114 aa6.29□□□□□ -1.4
SDC2-202ENST00000518385 KRTAP9-6A8MVA2 160 aa6.25□□□□□ -1.41
SDC2-202ENST00000518385 MUC12Q9UKN1 5478 aa6.25□□□□□ -1.41
SDC2-202ENST00000518385 KRTAP19-3Q7Z4W3 81 aa6.2□□□□□ -1.42
SDC2-202ENST00000518385 MT1GP13640 62 aa6.18□□□□□ -1.42
SDC2-202ENST00000518385 KRTAP4-9Q9BYQ8 210 aa6.17□□□□□ -1.42
SDC2-202ENST00000518385 KRTAP9-7A8MTY7 169 aa6.15□□□□□ -1.42
SDC2-202ENST00000518385 KRTAP4-2Q9BYR5 136 aa6.14□□□□□ -1.43
SDC2-202ENST00000518385 LCE1AQ5T7P2 110 aa6.13□□□□□ -1.43
SDC2-202ENST00000518385 LCE5AQ5TCM9 118 aa6.12□□□□□ -1.43
SDC2-202ENST00000518385 SPRR2EP22531 72 aa6.09□□□□□ -1.43
SDC2-202ENST00000518385 SPRR2BP35325 72 aa6.09□□□□□ -1.43
SDC2-202ENST00000518385 SPRR2AP35326 72 aa6.09□□□□□ -1.43
SDC2-202ENST00000518385 MDN1Q9NU22 5596 aa6.08□□□□□ -1.44
SDC2-202ENST00000518385 MT1MQ8N339 61 aa6.07□□□□□ -1.44
SDC2-202ENST00000518385 KRTAP4-3Q9BYR4 195 aa5.93□□□□□ -1.46
SDC2-202ENST00000518385 NEBP20929 6669 aa5.91□□□□□ -1.46
SDC2-202ENST00000518385 KRTAP4-11Q9BYQ6 195 aa5.87□□□□□ -1.47
SDC2-202ENST00000518385 SPRR2DP22532 72 aa5.86□□□□□ -1.47
SDC2-202ENST00000518385 KRTAP5-3Q6L8H2 238 aa5.82□□□□□ -1.48
SDC2-202ENST00000518385 DSTQ03001 7570 aaKnown RBP5.76□□□□□ -1.49
SDC2-202ENST00000518385 KRTAP12-4P60329 112 aa5.57□□□□□ -1.52
SDC2-202ENST00000518385 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
SDC2-202ENST00000518385 MT1AP04731 61 aa5.5□□□□□ -1.53
SDC2-202ENST00000518385 KRTAP5-5Q701N2 237 aaPredicted RBP5.49□□□□□ -1.53
SDC2-202ENST00000518385 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
SDC2-202ENST00000518385 KRTAP2-2Q9BYT5 123 aa5.42□□□□□ -1.54
SDC2-202ENST00000518385 KRTAP6-1Q3LI64 71 aa5.34□□□□□ -1.55
SDC2-202ENST00000518385 KRTAP5-4Q6L8H1 288 aa5.31□□□□□ -1.56
SDC2-202ENST00000518385 LCE3DQ9BYE3 92 aa5.2□□□□□ -1.58
SDC2-202ENST00000518385 LCE3EQ5T5B0 92 aa5.19□□□□□ -1.58
SDC2-202ENST00000518385 SYNE1Q8NF91 8797 aaKnown RBP5.14□□□□□ -1.59
SDC2-202ENST00000518385 MT4P47944 62 aa5.08□□□□□ -1.6
SDC2-202ENST00000518385 MT3P25713 68 aa4.95□□□□□ -1.62
SDC2-202ENST00000518385 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
SDC2-202ENST00000518385 HMCN1Q96RW7 5635 aa4.93□□□□□ -1.62
SDC2-202ENST00000518385 PRM1P04553 51 aa4.92□□□□□ -1.62
SDC2-202ENST00000518385 KRTAP6-2Q3LI66 62 aa4.9□□□□□ -1.63
SDC2-202ENST00000518385 KRTAP5-2Q701N4 177 aa4.79□□□□□ -1.64
SDC2-202ENST00000518385 GPR98Q8WXG9 6306 aa4.6□□□□□ -1.67
SDC2-202ENST00000518385 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
SDC2-202ENST00000518385 AHNAK2Q8IVF2 5795 aa4.45□□□□□ -1.7
SDC2-202ENST00000518385 LCE1EQ5T753 118 aa4.27□□□□□ -1.73
SDC2-202ENST00000518385 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.25□□□□□ -1.73
SDC2-202ENST00000518385 KRTAP5-10Q6L8G5 202 aa4.24□□□□□ -1.73
SDC2-202ENST00000518385 KRTAP5-8O75690 187 aa4.16□□□□□ -1.74
SDC2-202ENST00000518385 KRTAP5-1Q6L8H4 278 aa4.16□□□□□ -1.74
SDC2-202ENST00000518385 KRTAP5-7Q6L8G8 165 aa4.02□□□□□ -1.77
SDC2-202ENST00000518385 MUC5ACP98088 5654 aa3.98□□□□□ -1.77
SDC2-202ENST00000518385 LCE1CQ5T751 118 aa3.97□□□□□ -1.77
SDC2-202ENST00000518385 LCE1BQ5T7P3 118 aa3.97□□□□□ -1.77
SDC2-202ENST00000518385 KRTAP5-11Q6L8G4 156 aa3.94□□□□□ -1.78
SDC2-202ENST00000518385 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
SDC2-202ENST00000518385 AHNAKQ09666 5890 aaKnown RBP3.55□□□□□ -1.84
SDC2-202ENST00000518385 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
SDC2-202ENST00000518385 KRTAP21-2Q3LI59 83 aa3.51□□□□□ -1.85
SDC2-202ENST00000518385 KRTAP21-1Q3LI58 79 aa3.25□□□□□ -1.89
SDC2-202ENST00000518385 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
SDC2-202ENST00000518385 PHGR1C9JFL3 82 aa3.01□□□□□ -1.93
SDC2-202ENST00000518385 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
SDC2-202ENST00000518385 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 54.2 ms