RNA–Protein interactions for RNA: ENST00000517417.2

PCDHGA1-202, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHGA1, Length 4,604 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-202ENST00000517417 SPRR2BP35325 72 aa3.72□□□□□ -1.81
PCDHGA1-202ENST00000517417 SPRR2AP35326 72 aa3.72□□□□□ -1.81
PCDHGA1-202ENST00000517417 LCE3BQ5TA77 95 aa3.71□□□□□ -1.81
PCDHGA1-202ENST00000517417 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.82
PCDHGA1-202ENST00000517417 SSPOA2VEC9 5147 aa3.65□□□□□ -1.83
PCDHGA1-202ENST00000517417 KRTAP12-4P60329 112 aa3.62□□□□□ -1.83
PCDHGA1-202ENST00000517417 MT1LQ93083 61 aa3.59□□□□□ -1.83
PCDHGA1-202ENST00000517417 SPRR2DP22532 72 aa3.58□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP9-6A8MVA2 160 aa3.58□□□□□ -1.84
PCDHGA1-202ENST00000517417 MT1EP04732 61 aa3.56□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP19-7Q3SYF9 63 aa3.56□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP19-3Q7Z4W3 81 aa3.54□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP2-3P0C7H8 128 aa3.53□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP2-4Q9BYR9 128 aa3.53□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.84
PCDHGA1-202ENST00000517417 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.5□□□□□ -1.85
PCDHGA1-202ENST00000517417 KRTAP6-3Q3LI67 103 aa3.48□□□□□ -1.85
PCDHGA1-202ENST00000517417 LCE3DQ9BYE3 92 aa3.46□□□□□ -1.86
PCDHGA1-202ENST00000517417 FCGBPQ9Y6R7 5405 aaPredicted RBP3.45□□□□□ -1.86
PCDHGA1-202ENST00000517417 LOC100996750A0A140TA64 210 aa3.45□□□□□ -1.86
PCDHGA1-202ENST00000517417 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
PCDHGA1-202ENST00000517417 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
PCDHGA1-202ENST00000517417 DSTQ03001 7570 aaKnown RBP3.4□□□□□ -1.87
PCDHGA1-202ENST00000517417 MT1MQ8N339 61 aa3.4□□□□□ -1.87
PCDHGA1-202ENST00000517417 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
PCDHGA1-202ENST00000517417 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.88
PCDHGA1-202ENST00000517417 SYNE2Q8WXH0 6885 aaKnown RBP3.34□□□□□ -1.88
PCDHGA1-202ENST00000517417 LCE1AQ5T7P2 110 aa3.34□□□□□ -1.88
PCDHGA1-202ENST00000517417 MACF1Q9UPN3 7388 aaKnown RBP3.33□□□□□ -1.88
PCDHGA1-202ENST00000517417 MUC19Q7Z5P9 8384 aa3.33□□□□□ -1.88
PCDHGA1-202ENST00000517417 MT4P47944 62 aa3.25□□□□□ -1.89
PCDHGA1-202ENST00000517417 MT3P25713 68 aa3.21□□□□□ -1.9
PCDHGA1-202ENST00000517417 KRTAP4-9Q9BYQ8 210 aa3.2□□□□□ -1.9
PCDHGA1-202ENST00000517417 MDN1Q9NU22 5596 aa3.19□□□□□ -1.9
PCDHGA1-202ENST00000517417 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.9
PCDHGA1-202ENST00000517417 PRM1P04553 51 aa3.13□□□□□ -1.91
PCDHGA1-202ENST00000517417 KRTAP5-9P26371 169 aa3.11□□□□□ -1.91
PCDHGA1-202ENST00000517417 MT1AP04731 61 aa3.1□□□□□ -1.91
PCDHGA1-202ENST00000517417 LCE5AQ5TCM9 118 aa3.09□□□□□ -1.91
PCDHGA1-202ENST00000517417 LCE1DQ5T752 114 aa3.09□□□□□ -1.92
PCDHGA1-202ENST00000517417 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
PCDHGA1-202ENST00000517417 KRTAP6-1Q3LI64 71 aa3.06□□□□□ -1.92
PCDHGA1-202ENST00000517417 LCE4AQ5TA78 99 aa3.05□□□□□ -1.92
PCDHGA1-202ENST00000517417 NEBP20929 6669 aa2.94□□□□□ -1.94
PCDHGA1-202ENST00000517417 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
PCDHGA1-202ENST00000517417 KRTAP9-4Q9BYQ2 154 aa2.86□□□□□ -1.95
PCDHGA1-202ENST00000517417 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
PCDHGA1-202ENST00000517417 GPR98Q8WXG9 6306 aa2.65□□□□□ -1.99
PCDHGA1-202ENST00000517417 LCE1EQ5T753 118 aa2.65□□□□□ -1.99
PCDHGA1-202ENST00000517417 KRTAP20-2Q3LI61 65 aa2.58□□□□□ -2
PCDHGA1-202ENST00000517417 KRTAP4-6Q9BYQ5 205 aa2.56□□□□□ -2
PCDHGA1-202ENST00000517417 KRTAP5-4Q6L8H1 288 aa2.55□□□□□ -2
PCDHGA1-202ENST00000517417 LCE1CQ5T751 118 aa2.53□□□□□ -2
PCDHGA1-202ENST00000517417 LCE1FQ5T754 118 aa2.53□□□□□ -2
PCDHGA1-202ENST00000517417 KRTAP9-9Q9BYP9 154 aa2.48□□□□□ -2.01
PCDHGA1-202ENST00000517417 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
PCDHGA1-202ENST00000517417 KRTAP4-11Q9BYQ6 195 aa2.37□□□□□ -2.03
PCDHGA1-202ENST00000517417 MUC5ACP98088 5654 aa2.35□□□□□ -2.03
PCDHGA1-202ENST00000517417 KRTAP5-3Q6L8H2 238 aa2.35□□□□□ -2.03
PCDHGA1-202ENST00000517417 KRTAP5-2Q701N4 177 aa2.29□□□□□ -2.04
PCDHGA1-202ENST00000517417 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
PCDHGA1-202ENST00000517417 KRTAP4-12Q9BQ66 201 aa2.22□□□□□ -2.05
PCDHGA1-202ENST00000517417 KRTAP4-2Q9BYR5 136 aa2.22□□□□□ -2.05
PCDHGA1-202ENST00000517417 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
PCDHGA1-202ENST00000517417 KRTAP5-10Q6L8G5 202 aa2.08□□□□□ -2.08
PCDHGA1-202ENST00000517417 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
PCDHGA1-202ENST00000517417 KRTAP5-8O75690 187 aa2.06□□□□□ -2.08
PCDHGA1-202ENST00000517417 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
PCDHGA1-202ENST00000517417 AHNAKQ09666 5890 aaKnown RBP1.98□□□□□ -2.09
PCDHGA1-202ENST00000517417 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
PCDHGA1-202ENST00000517417 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
PCDHGA1-202ENST00000517417 KRTAP5-11Q6L8G4 156 aa1.79□□□□□ -2.12
PCDHGA1-202ENST00000517417 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.12
PCDHGA1-202ENST00000517417 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
PCDHGA1-202ENST00000517417 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
PCDHGA1-202ENST00000517417 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms