RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	KRTAP9-6	A0A140TA67	174 aa		7.1	□□□□□ -1.27
TRIO-223	ENST00000515710	MACF1	Q9UPN3	7388 aa	Known RBP	7.08	□□□□□ -1.28
TRIO-223	ENST00000515710	SPRR2F	Q96RM1	72 aa		7.07	□□□□□ -1.28
TRIO-223	ENST00000515710	KRTAP19-3	Q7Z4W3	81 aa		6.99	□□□□□ -1.29
TRIO-223	ENST00000515710	KRTAP5-9	P26371	169 aa		6.98	□□□□□ -1.29
TRIO-223	ENST00000515710	MT1G	P13640	62 aa		6.95	□□□□□ -1.3
TRIO-223	ENST00000515710	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	6.93	□□□□□ -1.3
TRIO-223	ENST00000515710	KRTAP4-7	Q9BYR0	210 aa		6.9	□□□□□ -1.3
TRIO-223	ENST00000515710	LCE5A	Q5TCM9	118 aa		6.85	□□□□□ -1.31
TRIO-223	ENST00000515710	MT1M	Q8N339	61 aa		6.85	□□□□□ -1.31
TRIO-223	ENST00000515710	KRTAP6-3	Q3LI67	103 aa		6.84	□□□□□ -1.32
TRIO-223	ENST00000515710	MUC12	Q9UKN1	5478 aa		6.83	□□□□□ -1.32
TRIO-223	ENST00000515710	SYNE2	Q8WXH0	6885 aa	Known RBP	6.8	□□□□□ -1.32
TRIO-223	ENST00000515710	LCE1A	Q5T7P2	110 aa		6.76	□□□□□ -1.33
TRIO-223	ENST00000515710	KRTAP9-6	A8MVA2	160 aa		6.7	□□□□□ -1.34
TRIO-223	ENST00000515710	SPRR2E	P22531	72 aa		6.7	□□□□□ -1.34
TRIO-223	ENST00000515710	SPRR2B	P35325	72 aa		6.7	□□□□□ -1.34
TRIO-223	ENST00000515710	SPRR2A	P35326	72 aa		6.7	□□□□□ -1.34
TRIO-223	ENST00000515710	KRTAP4-3	Q9BYR4	195 aa		6.69	□□□□□ -1.34
TRIO-223	ENST00000515710	MDN1	Q9NU22	5596 aa		6.54	□□□□□ -1.36
TRIO-223	ENST00000515710	KRTAP9-7	A8MTY7	169 aa		6.52	□□□□□ -1.37
TRIO-223	ENST00000515710	LOC100996750	A0A140TA64	210 aa		6.48	□□□□□ -1.37
TRIO-223	ENST00000515710	SPRR2D	P22532	72 aa		6.45	□□□□□ -1.38
TRIO-223	ENST00000515710	KRTAP2-3	P0C7H8	128 aa		6.34	□□□□□ -1.39
TRIO-223	ENST00000515710	KRTAP2-4	Q9BYR9	128 aa		6.34	□□□□□ -1.39
TRIO-223	ENST00000515710	KRTAP2-1	Q9BYU5	128 aa		6.34	□□□□□ -1.39
TRIO-223	ENST00000515710	DST	Q03001	7570 aa	Known RBP	6.29	□□□□□ -1.4
TRIO-223	ENST00000515710	LCE3B	Q5TA77	95 aa		6.19	□□□□□ -1.42
TRIO-223	ENST00000515710	NEB	P20929	6669 aa		6.19	□□□□□ -1.42
TRIO-223	ENST00000515710	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.17	□□□□□ -1.42
TRIO-223	ENST00000515710	MT1A	P04731	61 aa		6.09	□□□□□ -1.44
TRIO-223	ENST00000515710	KRTAP6-1	Q3LI64	71 aa		6.01	□□□□□ -1.45
TRIO-223	ENST00000515710	KRTAP5-4	Q6L8H1	288 aa		5.86	□□□□□ -1.47
TRIO-223	ENST00000515710	KRTAP2-2	Q9BYT5	123 aa		5.85	□□□□□ -1.47
TRIO-223	ENST00000515710	KRTAP20-1	Q3LI63	56 aa		5.81	□□□□□ -1.48
TRIO-223	ENST00000515710	KRTAP9-4	Q9BYQ2	154 aa		5.79	□□□□□ -1.48
TRIO-223	ENST00000515710	LCE4A	Q5TA78	99 aa		5.76	□□□□□ -1.49
TRIO-223	ENST00000515710	SYNE1	Q8NF91	8797 aa	Known RBP	5.74	□□□□□ -1.49
TRIO-223	ENST00000515710	KRTAP12-4	P60329	112 aa		5.73	□□□□□ -1.49
TRIO-223	ENST00000515710	MT4	P47944	62 aa		5.58	□□□□□ -1.52
TRIO-223	ENST00000515710	KRTAP4-6	Q9BYQ5	205 aa		5.54	□□□□□ -1.52
TRIO-223	ENST00000515710	MT3	P25713	68 aa		5.53	□□□□□ -1.52
TRIO-223	ENST00000515710	KRTAP6-2	Q3LI66	62 aa		5.52	□□□□□ -1.53
TRIO-223	ENST00000515710	KRTAP4-9	Q9BYQ8	210 aa		5.51	□□□□□ -1.53
TRIO-223	ENST00000515710	LCE1D	Q5T752	114 aa		5.47	□□□□□ -1.53
TRIO-223	ENST00000515710	KRTAP20-2	Q3LI61	65 aa		5.46	□□□□□ -1.53
TRIO-223	ENST00000515710	LCE3D	Q9BYE3	92 aa		5.36	□□□□□ -1.55
TRIO-223	ENST00000515710	KRTAP5-2	Q701N4	177 aa		5.33	□□□□□ -1.56
TRIO-223	ENST00000515710	HMCN1	Q96RW7	5635 aa		5.27	□□□□□ -1.57
TRIO-223	ENST00000515710	KRTAP5-3	Q6L8H2	238 aa		5.27	□□□□□ -1.57
TRIO-223	ENST00000515710	LCE3E	Q5T5B0	92 aa		5.24	□□□□□ -1.57
TRIO-223	ENST00000515710	PRM1	P04553	51 aa		4.95	□□□□□ -1.62
TRIO-223	ENST00000515710	OBSCN	Q5VST9	7968 aa		4.94	□□□□□ -1.62
TRIO-223	ENST00000515710	LCE1E	Q5T753	118 aa		4.78	□□□□□ -1.64
TRIO-223	ENST00000515710	KRTAP4-11	Q9BYQ6	195 aa		4.72	□□□□□ -1.65
TRIO-223	ENST00000515710	AHNAK2	Q8IVF2	5795 aa		4.63	□□□□□ -1.67
TRIO-223	ENST00000515710	KRTAP5-1	Q6L8H4	278 aa		4.58	□□□□□ -1.68
TRIO-223	ENST00000515710	KRTAP5-8	O75690	187 aa		4.54	□□□□□ -1.68
TRIO-223	ENST00000515710	KRTAP5-10	Q6L8G5	202 aa		4.5	□□□□□ -1.69
TRIO-223	ENST00000515710	LCE1B	Q5T7P3	118 aa		4.46	□□□□□ -1.7
TRIO-223	ENST00000515710	LCE1C	Q5T751	118 aa		4.44	□□□□□ -1.7
TRIO-223	ENST00000515710	KRTAP5-7	Q6L8G8	165 aa		4.43	□□□□□ -1.7
TRIO-223	ENST00000515710	KRTAP4-2	Q9BYR5	136 aa		4.42	□□□□□ -1.7
TRIO-223	ENST00000515710	MUC5AC	P98088	5654 aa		4.35	□□□□□ -1.71
TRIO-223	ENST00000515710	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.17	□□□□□ -1.74
TRIO-223	ENST00000515710	KRTAP9-9	Q9BYP9	154 aa		4.09	□□□□□ -1.76
TRIO-223	ENST00000515710	GPR98	Q8WXG9	6306 aa		4.07	□□□□□ -1.76
TRIO-223	ENST00000515710	KRTAP4-12	Q9BQ66	201 aa		3.98	□□□□□ -1.77
TRIO-223	ENST00000515710	KRTAP21-2	Q3LI59	83 aa		3.93	□□□□□ -1.78
TRIO-223	ENST00000515710	KRTAP5-11	Q6L8G4	156 aa		3.91	□□□□□ -1.78
TRIO-223	ENST00000515710	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.76	□□□□□ -1.81
TRIO-223	ENST00000515710	LCE1F	Q5T754	118 aa		3.54	□□□□□ -1.84
TRIO-223	ENST00000515710	KRTAP4-4	Q9BYR3	166 aa		3.47	□□□□□ -1.85
TRIO-223	ENST00000515710	AHNAK	Q09666	5890 aa	Known RBP	3.43	□□□□□ -1.86
TRIO-223	ENST00000515710	PHGR1	C9JFL3	82 aa		3.35	□□□□□ -1.87
TRIO-223	ENST00000515710	KRTAP21-1	Q3LI58	79 aa		3.31	□□□□□ -1.88
TRIO-223	ENST00000515710	MUC19	Q7Z5P9	8384 aa		2.86	□□□□□ -1.95
TRIO-223	ENST00000515710	MUC16	Q8WXI7	14507 aa		2.19	□□□□□ -2.06

Retrieved 78 of 20,778 RNA–protein pairs in 170.2 ms