RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 HMCN1Q96RW7 5635 aa6.07□□□□□ -1.44
DDX41-217ENST00000515562 CCDC179H3BU77 68 aa6.07□□□□□ -1.44
DDX41-217ENST00000515562 MT4P47944 62 aa6.07□□□□□ -1.44
DDX41-217ENST00000515562 KRTAP4-3Q9BYR4 195 aa6.04□□□□□ -1.44
DDX41-217ENST00000515562 LINC01558Q9Y6Z2 57 aa6.03□□□□□ -1.44
DDX41-217ENST00000515562 KRTAP5-4Q6L8H1 288 aa6□□□□□ -1.45
DDX41-217ENST00000515562 KRTAP12-3P60328 96 aa5.96□□□□□ -1.46
DDX41-217ENST00000515562 AHNAK2Q8IVF2 5795 aa5.95□□□□□ -1.46
DDX41-217ENST00000515562 UQCR11O14957 56 aa5.94□□□□□ -1.46
DDX41-217ENST00000515562 TMEM258P61165 79 aa5.89□□□□□ -1.47
DDX41-217ENST00000515562 KRTAP5-10Q6L8G5 202 aa5.87□□□□□ -1.47
DDX41-217ENST00000515562 KRTAP4-6Q9BYQ5 205 aa5.87□□□□□ -1.47
DDX41-217ENST00000515562 KRTAP4-7Q9BYR0 210 aa5.86□□□□□ -1.47
DDX41-217ENST00000515562 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
DDX41-217ENST00000515562 SVIPQ8NHG7 77 aa5.79□□□□□ -1.48
DDX41-217ENST00000515562 MIR22HGQ0VDD5 57 aa5.77□□□□□ -1.49
DDX41-217ENST00000515562 K7ERS5 55 aa5.73□□□□□ -1.49
DDX41-217ENST00000515562 KRTAP5-7Q6L8G8 165 aa5.72□□□□□ -1.49
DDX41-217ENST00000515562 KRTAP5-5Q701N2 237 aaPredicted RBP5.72□□□□□ -1.49
DDX41-217ENST00000515562 KRTAP20-2Q3LI61 65 aa5.67□□□□□ -1.5
DDX41-217ENST00000515562 SPRR5A0A1B0GTR4 108 aa5.65□□□□□ -1.5
DDX41-217ENST00000515562 KRTAP19-4Q3LI73 84 aa5.65□□□□□ -1.5
DDX41-217ENST00000515562 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
DDX41-217ENST00000515562 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
DDX41-217ENST00000515562 V9GYY9 64 aa5.62□□□□□ -1.51
DDX41-217ENST00000515562 KRTAP23-1A1A580 65 aa5.59□□□□□ -1.51
DDX41-217ENST00000515562 PSPHP1O15172 72 aa5.58□□□□□ -1.52
DDX41-217ENST00000515562 LOC100996750A0A140TA64 210 aa5.56□□□□□ -1.52
DDX41-217ENST00000515562 Q1T7F1 81 aa5.53□□□□□ -1.52
DDX41-217ENST00000515562 KRTAP15-1Q3LI76 137 aa5.53□□□□□ -1.52
DDX41-217ENST00000515562 LCE3CQ5T5A8 94 aa5.47□□□□□ -1.53
DDX41-217ENST00000515562 A6NED7 52 aa5.41□□□□□ -1.54
DDX41-217ENST00000515562 SYNE1Q8NF91 8797 aaKnown RBP5.39□□□□□ -1.55
DDX41-217ENST00000515562 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
DDX41-217ENST00000515562 MT1AP04731 61 aa5.3□□□□□ -1.56
DDX41-217ENST00000515562 ROMO1P60602 79 aa5.28□□□□□ -1.56
DDX41-217ENST00000515562 RPS28P62857 69 aaKnown RBP5.27□□□□□ -1.57
DDX41-217ENST00000515562 KRTAP6-1Q3LI64 71 aa5.25□□□□□ -1.57
DDX41-217ENST00000515562 KRTAP5-2Q701N4 177 aa5.24□□□□□ -1.57
DDX41-217ENST00000515562 KRTAP4-11Q9BYQ6 195 aa5.21□□□□□ -1.58
DDX41-217ENST00000515562 KRTAP4-12Q9BQ66 201 aa5.17□□□□□ -1.58
DDX41-217ENST00000515562 KRTAP9-6A8MVA2 160 aa5.13□□□□□ -1.59
DDX41-217ENST00000515562 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
DDX41-217ENST00000515562 PCP4P48539 62 aa5.11□□□□□ -1.59
DDX41-217ENST00000515562 AHNAKQ09666 5890 aaKnown RBP5.09□□□□□ -1.59
DDX41-217ENST00000515562 KRTAP6-2Q3LI66 62 aa5.05□□□□□ -1.6
DDX41-217ENST00000515562 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
DDX41-217ENST00000515562 KRTAP5-8O75690 187 aa5.02□□□□□ -1.61
DDX41-217ENST00000515562 MUC5BQ9HC84 5762 aaPredicted RBP4.98□□□□□ -1.61
DDX41-217ENST00000515562 OBSCNQ5VST9 7968 aa4.91□□□□□ -1.62
DDX41-217ENST00000515562 MT3P25713 68 aa4.86□□□□□ -1.63
DDX41-217ENST00000515562 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
DDX41-217ENST00000515562 KRTAP9-9Q9BYP9 154 aa4.82□□□□□ -1.64
DDX41-217ENST00000515562 KRTAP5-1Q6L8H4 278 aa4.71□□□□□ -1.66
DDX41-217ENST00000515562 LCE1EQ5T753 118 aa4.5□□□□□ -1.69
DDX41-217ENST00000515562 BRK1Q8WUW1 75 aa4.46□□□□□ -1.7
DDX41-217ENST00000515562 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
DDX41-217ENST00000515562 LCE1BQ5T7P3 118 aa4.22□□□□□ -1.73
DDX41-217ENST00000515562 PMAIP1Q13794 54 aa4.17□□□□□ -1.74
DDX41-217ENST00000515562 LCE1CQ5T751 118 aa4.17□□□□□ -1.74
DDX41-217ENST00000515562 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
DDX41-217ENST00000515562 LCE3DQ9BYE3 92 aa3.92□□□□□ -1.78
DDX41-217ENST00000515562 KRTAP5-11Q6L8G4 156 aa3.79□□□□□ -1.8
DDX41-217ENST00000515562 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
DDX41-217ENST00000515562 NDUFAF8A1L188 74 aa3.78□□□□□ -1.8
DDX41-217ENST00000515562 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
DDX41-217ENST00000515562 PRO0628Q9UI54 55 aa3.7□□□□□ -1.82
DDX41-217ENST00000515562 LCE3EQ5T5B0 92 aa3.67□□□□□ -1.82
DDX41-217ENST00000515562 KTN1-AS1Q86SY8 53 aa3.61□□□□□ -1.83
DDX41-217ENST00000515562 LUZP6Q538Z0 58 aa3.52□□□□□ -1.85
DDX41-217ENST00000515562 KRTAP21-2Q3LI59 83 aa3.46□□□□□ -1.86
DDX41-217ENST00000515562 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
DDX41-217ENST00000515562 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
DDX41-217ENST00000515562 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
DDX41-217ENST00000515562 PRM1P04553 51 aa2.68□□□□□ -1.98
DDX41-217ENST00000515562 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
DDX41-217ENST00000515562 INE1O15225 51 aa2.33□□□□□ -2.04
DDX41-217ENST00000515562 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 191.9 ms