RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KRTAP19-6Q3LI70 58 aa3.27□□□□□ -1.89
VCAN-210ENST00000513960 MT1LQ93083 61 aa3.27□□□□□ -1.89
VCAN-210ENST00000513960 KRTAP2-3P0C7H8 128 aa3.25□□□□□ -1.89
VCAN-210ENST00000513960 KRTAP2-4Q9BYR9 128 aa3.25□□□□□ -1.89
VCAN-210ENST00000513960 KRTAP2-1Q9BYU5 128 aa3.25□□□□□ -1.89
VCAN-210ENST00000513960 LOC100996750A0A140TA64 210 aa3.19□□□□□ -1.9
VCAN-210ENST00000513960 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
VCAN-210ENST00000513960 MT1GP13640 62 aa3.17□□□□□ -1.9
VCAN-210ENST00000513960 KRTAP4-3Q9BYR4 195 aa3.16□□□□□ -1.9
VCAN-210ENST00000513960 DSTQ03001 7570 aaKnown RBP3.11□□□□□ -1.91
VCAN-210ENST00000513960 FCGBPQ9Y6R7 5405 aaPredicted RBP3.11□□□□□ -1.91
VCAN-210ENST00000513960 KRTAP19-3Q7Z4W3 81 aa3.09□□□□□ -1.91
VCAN-210ENST00000513960 LCE3BQ5TA77 95 aa3.07□□□□□ -1.92
VCAN-210ENST00000513960 MT1MQ8N339 61 aa3.07□□□□□ -1.92
VCAN-210ENST00000513960 MUC12Q9UKN1 5478 aa3.07□□□□□ -1.92
VCAN-210ENST00000513960 SPRR2FQ96RM1 72 aa3.03□□□□□ -1.92
VCAN-210ENST00000513960 KRTAP4-9Q9BYQ8 210 aa3.02□□□□□ -1.93
VCAN-210ENST00000513960 LCE5AQ5TCM9 118 aa2.96□□□□□ -1.94
VCAN-210ENST00000513960 MACF1Q9UPN3 7388 aaKnown RBP2.92□□□□□ -1.94
VCAN-210ENST00000513960 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
VCAN-210ENST00000513960 PRM1P04553 51 aa2.87□□□□□ -1.95
VCAN-210ENST00000513960 LCE3DQ9BYE3 92 aa2.85□□□□□ -1.95
VCAN-210ENST00000513960 SYNE2Q8WXH0 6885 aaKnown RBP2.84□□□□□ -1.95
VCAN-210ENST00000513960 KRTAP9-7A8MTY7 169 aa2.84□□□□□ -1.96
VCAN-210ENST00000513960 KRTAP9-2Q9BYQ4 174 aa2.83□□□□□ -1.96
VCAN-210ENST00000513960 LCE3EQ5T5B0 92 aa2.82□□□□□ -1.96
VCAN-210ENST00000513960 MDN1Q9NU22 5596 aa2.79□□□□□ -1.96
VCAN-210ENST00000513960 LCE1AQ5T7P2 110 aa2.78□□□□□ -1.96
VCAN-210ENST00000513960 SPRR2EP22531 72 aa2.77□□□□□ -1.97
VCAN-210ENST00000513960 SPRR2BP35325 72 aa2.77□□□□□ -1.97
VCAN-210ENST00000513960 SPRR2AP35326 72 aa2.77□□□□□ -1.97
VCAN-210ENST00000513960 KRTAP6-1Q3LI64 71 aa2.77□□□□□ -1.97
VCAN-210ENST00000513960 KRTAP5-9P26371 169 aa2.76□□□□□ -1.97
VCAN-210ENST00000513960 MT1AP04731 61 aa2.76□□□□□ -1.97
VCAN-210ENST00000513960 KRTAP4-6Q9BYQ5 205 aa2.73□□□□□ -1.97
VCAN-210ENST00000513960 KRTAP5-5Q701N2 237 aaPredicted RBP2.67□□□□□ -1.98
VCAN-210ENST00000513960 SPRR2DP22532 72 aa2.65□□□□□ -1.98
VCAN-210ENST00000513960 KRTAP6-2Q3LI66 62 aa2.65□□□□□ -1.99
VCAN-210ENST00000513960 KRTAP9-6A0A140TA67 174 aa2.59□□□□□ -1.99
VCAN-210ENST00000513960 KRTAP9-4Q9BYQ2 154 aa2.59□□□□□ -1.99
VCAN-210ENST00000513960 KRTAP6-3Q3LI67 103 aa2.58□□□□□ -2
VCAN-210ENST00000513960 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.55□□□□□ -2
VCAN-210ENST00000513960 MT3P25713 68 aa2.51□□□□□ -2.01
VCAN-210ENST00000513960 LCE1EQ5T753 118 aa2.46□□□□□ -2.02
VCAN-210ENST00000513960 KRTAP2-2Q9BYT5 123 aa2.45□□□□□ -2.02
VCAN-210ENST00000513960 KRTAP5-4Q6L8H1 288 aa2.37□□□□□ -2.03
VCAN-210ENST00000513960 NEBP20929 6669 aa2.36□□□□□ -2.03
VCAN-210ENST00000513960 MT4P47944 62 aa2.34□□□□□ -2.04
VCAN-210ENST00000513960 LCE4AQ5TA78 99 aa2.29□□□□□ -2.04
VCAN-210ENST00000513960 KRTAP20-2Q3LI61 65 aa2.26□□□□□ -2.05
VCAN-210ENST00000513960 LCE1DQ5T752 114 aa2.24□□□□□ -2.05
VCAN-210ENST00000513960 KRTAP4-12Q9BQ66 201 aa2.24□□□□□ -2.05
VCAN-210ENST00000513960 LCE1BQ5T7P3 118 aa2.21□□□□□ -2.06
VCAN-210ENST00000513960 KRTAP5-2Q701N4 177 aa2.21□□□□□ -2.06
VCAN-210ENST00000513960 KRTAP4-11Q9BYQ6 195 aa2.19□□□□□ -2.06
VCAN-210ENST00000513960 KRTAP9-9Q9BYP9 154 aa2.18□□□□□ -2.06
VCAN-210ENST00000513960 HMCN1Q96RW7 5635 aa2.18□□□□□ -2.06
VCAN-210ENST00000513960 KRTAP20-1Q3LI63 56 aa2.15□□□□□ -2.06
VCAN-210ENST00000513960 KRTAP5-3Q6L8H2 238 aa2.12□□□□□ -2.07
VCAN-210ENST00000513960 KRTAP4-2Q9BYR5 136 aa2.08□□□□□ -2.08
VCAN-210ENST00000513960 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
VCAN-210ENST00000513960 MUC5ACP98088 5654 aa2.06□□□□□ -2.08
VCAN-210ENST00000513960 KRTAP5-10Q6L8G5 202 aa1.91□□□□□ -2.1
VCAN-210ENST00000513960 LCE1CQ5T751 118 aa1.91□□□□□ -2.1
VCAN-210ENST00000513960 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
VCAN-210ENST00000513960 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.12
VCAN-210ENST00000513960 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.12
VCAN-210ENST00000513960 KRTAP5-8O75690 187 aa1.77□□□□□ -2.13
VCAN-210ENST00000513960 AHNAK2Q8IVF2 5795 aa1.77□□□□□ -2.13
VCAN-210ENST00000513960 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
VCAN-210ENST00000513960 GPR98Q8WXG9 6306 aa1.76□□□□□ -2.13
VCAN-210ENST00000513960 KRTAP5-7Q6L8G8 165 aa1.73□□□□□ -2.13
VCAN-210ENST00000513960 KRTAP5-11Q6L8G4 156 aa1.64□□□□□ -2.15
VCAN-210ENST00000513960 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
VCAN-210ENST00000513960 MUC5BQ9HC84 5762 aaPredicted RBP1.6□□□□□ -2.15
VCAN-210ENST00000513960 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
VCAN-210ENST00000513960 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
VCAN-210ENST00000513960 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 186.2 ms