RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	PP632	Q6XCG6	107 aa		4.7	□□□□□ -1.66
RNF4-215	ENST00000511843	KRTAP4-9	Q9BYQ8	210 aa		4.69	□□□□□ -1.66
RNF4-215	ENST00000511843	KRTAP4-3	Q9BYR4	195 aa		4.67	□□□□□ -1.66
RNF4-215	ENST00000511843	MIR22HG	Q0VDD5	57 aa		4.62	□□□□□ -1.67
RNF4-215	ENST00000511843	PSPHP1	O15172	72 aa		4.59	□□□□□ -1.67
RNF4-215	ENST00000511843	GPR98	Q8WXG9	6306 aa		4.58	□□□□□ -1.68
RNF4-215	ENST00000511843	KRTAP12-3	P60328	96 aa		4.58	□□□□□ -1.68
RNF4-215	ENST00000511843	LCE1D	Q5T752	114 aa		4.57	□□□□□ -1.68
RNF4-215	ENST00000511843	KRTAP4-7	Q9BYR0	210 aa		4.57	□□□□□ -1.68
RNF4-215	ENST00000511843	MT4	P47944	62 aa		4.54	□□□□□ -1.68
RNF4-215	ENST00000511843		Q1T7F1	81 aa		4.51	□□□□□ -1.69
RNF4-215	ENST00000511843	LCE4A	Q5TA78	99 aa		4.51	□□□□□ -1.69
RNF4-215	ENST00000511843	KRTAP9-9	Q9BYP9	154 aa		4.51	□□□□□ -1.69
RNF4-215	ENST00000511843	KRTAP9-4	Q9BYQ2	154 aa		4.51	□□□□□ -1.69
RNF4-215	ENST00000511843	KRTAP25-1	Q3LHN0	102 aa		4.49	□□□□□ -1.69
RNF4-215	ENST00000511843	KRTAP4-12	Q9BQ66	201 aa		4.49	□□□□□ -1.69
RNF4-215	ENST00000511843		V9GYY9	64 aa		4.49	□□□□□ -1.69
RNF4-215	ENST00000511843	HMCN1	Q96RW7	5635 aa		4.49	□□□□□ -1.69
RNF4-215	ENST00000511843		K7ERS5	55 aa		4.48	□□□□□ -1.69
RNF4-215	ENST00000511843	KRTAP5-4	Q6L8H1	288 aa		4.45	□□□□□ -1.7
RNF4-215	ENST00000511843		A6NED7	52 aa		4.4	□□□□□ -1.71
RNF4-215	ENST00000511843	AHNAK2	Q8IVF2	5795 aa		4.38	□□□□□ -1.71
RNF4-215	ENST00000511843	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.31	□□□□□ -1.72
RNF4-215	ENST00000511843	KRTAP23-1	A1A580	65 aa		4.28	□□□□□ -1.72
RNF4-215	ENST00000511843	KRTAP15-1	Q3LI76	137 aa		4.28	□□□□□ -1.72
RNF4-215	ENST00000511843	CDC42SE1	Q9NRR8	79 aa		4.27	□□□□□ -1.73
RNF4-215	ENST00000511843	PCP4	P48539	62 aa		4.25	□□□□□ -1.73
RNF4-215	ENST00000511843	RPS28	P62857	69 aa	Known RBP	4.24	□□□□□ -1.73
RNF4-215	ENST00000511843	ROMO1	P60602	79 aa		4.22	□□□□□ -1.73
RNF4-215	ENST00000511843	KRTAP20-2	Q3LI61	65 aa		4.22	□□□□□ -1.73
RNF4-215	ENST00000511843	LCE3C	Q5T5A8	94 aa		4.22	□□□□□ -1.73
RNF4-215	ENST00000511843	KRTAP5-10	Q6L8G5	202 aa		4.2	□□□□□ -1.74
RNF4-215	ENST00000511843	KRTAP19-4	Q3LI73	84 aa		4.19	□□□□□ -1.74
RNF4-215	ENST00000511843	SPRR5	A0A1B0GTR4	108 aa		4.16	□□□□□ -1.74
RNF4-215	ENST00000511843	KRTAP12-4	P60329	112 aa		4.16	□□□□□ -1.74
RNF4-215	ENST00000511843	SYNE1	Q8NF91	8797 aa	Known RBP	4.14	□□□□□ -1.75
RNF4-215	ENST00000511843	KRTAP5-3	Q6L8H2	238 aa		4.13	□□□□□ -1.75
RNF4-215	ENST00000511843	KRTAP4-2	Q9BYR5	136 aa		4.13	□□□□□ -1.75
RNF4-215	ENST00000511843	KRTAP9-6	A8MVA2	160 aa		4.03	□□□□□ -1.76
RNF4-215	ENST00000511843	KRTAP6-1	Q3LI64	71 aa		4.03	□□□□□ -1.76
RNF4-215	ENST00000511843	MT1A	P04731	61 aa		4.02	□□□□□ -1.77
RNF4-215	ENST00000511843	KRTAP5-7	Q6L8G8	165 aa		4.02	□□□□□ -1.77
RNF4-215	ENST00000511843	KRTAP4-11	Q9BYQ6	195 aa		3.96	□□□□□ -1.78
RNF4-215	ENST00000511843	KRTAP5-2	Q701N4	177 aa		3.91	□□□□□ -1.78
RNF4-215	ENST00000511843	KRTAP6-2	Q3LI66	62 aa		3.84	□□□□□ -1.79
RNF4-215	ENST00000511843	BRK1	Q8WUW1	75 aa		3.79	□□□□□ -1.8
RNF4-215	ENST00000511843	OBSCN	Q5VST9	7968 aa		3.75	□□□□□ -1.81
RNF4-215	ENST00000511843	KRTAP5-8	O75690	187 aa		3.72	□□□□□ -1.81
RNF4-215	ENST00000511843	MT3	P25713	68 aa		3.65	□□□□□ -1.83
RNF4-215	ENST00000511843	SVIP	Q8NHG7	77 aa		3.64	□□□□□ -1.83
RNF4-215	ENST00000511843	AHNAK	Q09666	5890 aa	Known RBP	3.58	□□□□□ -1.84
RNF4-215	ENST00000511843	MUC5AC	P98088	5654 aa		3.55	□□□□□ -1.84
RNF4-215	ENST00000511843	PMAIP1	Q13794	54 aa		3.53	□□□□□ -1.84
RNF4-215	ENST00000511843	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.52	□□□□□ -1.85
RNF4-215	ENST00000511843	KRTAP5-1	Q6L8H4	278 aa		3.51	□□□□□ -1.85
RNF4-215	ENST00000511843	PRAC1	Q96KF2	57 aa		3.48	□□□□□ -1.85
RNF4-215	ENST00000511843	LCE1E	Q5T753	118 aa		3.32	□□□□□ -1.88
RNF4-215	ENST00000511843	PRO0628	Q9UI54	55 aa		3.22	□□□□□ -1.89
RNF4-215	ENST00000511843	LCE1B	Q5T7P3	118 aa		3.21	□□□□□ -1.9
RNF4-215	ENST00000511843		H3BS24	57 aa		3.19	□□□□□ -1.9
RNF4-215	ENST00000511843	KTN1-AS1	Q86SY8	53 aa		3.1	□□□□□ -1.91
RNF4-215	ENST00000511843	LCE1C	Q5T751	118 aa		3.09	□□□□□ -1.91
RNF4-215	ENST00000511843	LCE3D	Q9BYE3	92 aa		3.04	□□□□□ -1.92
RNF4-215	ENST00000511843	LCE3E	Q5T5B0	92 aa		2.86	□□□□□ -1.95
RNF4-215	ENST00000511843	LUZP6	Q538Z0	58 aa		2.85	□□□□□ -1.95
RNF4-215	ENST00000511843	KRTAP5-11	Q6L8G4	156 aa		2.81	□□□□□ -1.96
RNF4-215	ENST00000511843	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.81	□□□□□ -1.96
RNF4-215	ENST00000511843		A0A0A0MQY5	61 aa		2.7	□□□□□ -1.98
RNF4-215	ENST00000511843	LCE1F	Q5T754	118 aa		2.68	□□□□□ -1.98
RNF4-215	ENST00000511843	KRTAP21-2	Q3LI59	83 aa		2.63	□□□□□ -1.99
RNF4-215	ENST00000511843	KRTAP4-4	Q9BYR3	166 aa		2.48	□□□□□ -2.01
RNF4-215	ENST00000511843	PHGR1	C9JFL3	82 aa		2.45	□□□□□ -2.02
RNF4-215	ENST00000511843	NDUFAF8	A1L188	74 aa		2.3	□□□□□ -2.04
RNF4-215	ENST00000511843	MUC19	Q7Z5P9	8384 aa		2.3	□□□□□ -2.04
RNF4-215	ENST00000511843	PRM1	P04553	51 aa		2.19	□□□□□ -2.06
RNF4-215	ENST00000511843	INE1	O15225	51 aa		1.87	□□□□□ -2.11
RNF4-215	ENST00000511843	KRTAP21-1	Q3LI58	79 aa		1.85	□□□□□ -2.11
RNF4-215	ENST00000511843	MUC16	Q8WXI7	14507 aa		1.6	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 5.9 ms