RNA–Protein interactions for RNA: ENST00000510545.5

CLDND1-222, Transcript of claudin domain containing 1, human

APPRIS P1 TSL 5 BASIC

Gene CLDND1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-222	ENST00000510545	MACF1	Q9UPN3	7388 aa	Known RBP	5.72	□□□□□ -1.49
CLDND1-222	ENST00000510545	MT1L	Q93083	61 aa		5.72	□□□□□ -1.49
CLDND1-222	ENST00000510545	MUC12	Q9UKN1	5478 aa		5.68	□□□□□ -1.5
CLDND1-222	ENST00000510545	CRCT1	Q9UGL9	99 aa		5.68	□□□□□ -1.5
CLDND1-222	ENST00000510545	KRTAP4-7	Q9BYR0	210 aa		5.67	□□□□□ -1.5
CLDND1-222	ENST00000510545	LCE3B	Q5TA77	95 aa		5.66	□□□□□ -1.5
CLDND1-222	ENST00000510545	SYNE2	Q8WXH0	6885 aa	Known RBP	5.58	□□□□□ -1.52
CLDND1-222	ENST00000510545	KRTAP19-4	Q3LI73	84 aa		5.56	□□□□□ -1.52
CLDND1-222	ENST00000510545	KRTAP9-6	A8MVA2	160 aa		5.55	□□□□□ -1.52
CLDND1-222	ENST00000510545	SPRR2F	Q96RM1	72 aa		5.54	□□□□□ -1.52
CLDND1-222	ENST00000510545	KRTAP9-9	Q9BYP9	154 aa		5.52	□□□□□ -1.53
CLDND1-222	ENST00000510545	KRTAP9-4	Q9BYQ2	154 aa		5.52	□□□□□ -1.53
CLDND1-222	ENST00000510545	KRTAP19-3	Q7Z4W3	81 aa		5.51	□□□□□ -1.53
CLDND1-222	ENST00000510545	MT1G	P13640	62 aa		5.45	□□□□□ -1.54
CLDND1-222	ENST00000510545	KRTAP4-3	Q9BYR4	195 aa		5.45	□□□□□ -1.54
CLDND1-222	ENST00000510545	MT1M	Q8N339	61 aa		5.45	□□□□□ -1.54
CLDND1-222	ENST00000510545	MDN1	Q9NU22	5596 aa		5.4	□□□□□ -1.54
CLDND1-222	ENST00000510545	LCE5A	Q5TCM9	118 aa		5.4	□□□□□ -1.54
CLDND1-222	ENST00000510545	KRTAP4-2	Q9BYR5	136 aa		5.39	□□□□□ -1.55
CLDND1-222	ENST00000510545	KRTAP5-9	P26371	169 aa		5.38	□□□□□ -1.55
CLDND1-222	ENST00000510545	INE1	O15225	51 aa		5.35	□□□□□ -1.55
CLDND1-222	ENST00000510545	DST	Q03001	7570 aa	Known RBP	5.31	□□□□□ -1.56
CLDND1-222	ENST00000510545	LCE1D	Q5T752	114 aa		5.27	□□□□□ -1.57
CLDND1-222	ENST00000510545	LCE1A	Q5T7P2	110 aa		5.27	□□□□□ -1.57
CLDND1-222	ENST00000510545	KRTAP4-9	Q9BYQ8	210 aa		5.27	□□□□□ -1.57
CLDND1-222	ENST00000510545	KRTAP4-12	Q9BQ66	201 aa		5.24	□□□□□ -1.57
CLDND1-222	ENST00000510545	SPRR2E	P22531	72 aa		5.18	□□□□□ -1.58
CLDND1-222	ENST00000510545	SPRR2B	P35325	72 aa		5.18	□□□□□ -1.58
CLDND1-222	ENST00000510545	SPRR2A	P35326	72 aa		5.18	□□□□□ -1.58
CLDND1-222	ENST00000510545	KRTAP6-3	Q3LI67	103 aa		5.15	□□□□□ -1.58
CLDND1-222	ENST00000510545	KRTAP2-3	P0C7H8	128 aa		5.14	□□□□□ -1.59
CLDND1-222	ENST00000510545	KRTAP2-4	Q9BYR9	128 aa		5.14	□□□□□ -1.59
CLDND1-222	ENST00000510545	KRTAP2-1	Q9BYU5	128 aa		5.14	□□□□□ -1.59
CLDND1-222	ENST00000510545	SPRR2D	P22532	72 aa		4.97	□□□□□ -1.61
CLDND1-222	ENST00000510545	NEB	P20929	6669 aa		4.9	□□□□□ -1.62
CLDND1-222	ENST00000510545	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.9	□□□□□ -1.63
CLDND1-222	ENST00000510545	KRTAP9-7	A8MTY7	169 aa		4.88	□□□□□ -1.63
CLDND1-222	ENST00000510545	KRTAP6-1	Q3LI64	71 aa		4.85	□□□□□ -1.63
CLDND1-222	ENST00000510545	KRTAP4-11	Q9BYQ6	195 aa		4.85	□□□□□ -1.63
CLDND1-222	ENST00000510545	MT1A	P04731	61 aa		4.82	□□□□□ -1.64
CLDND1-222	ENST00000510545	SYNE1	Q8NF91	8797 aa	Known RBP	4.8	□□□□□ -1.64
CLDND1-222	ENST00000510545	HMCN1	Q96RW7	5635 aa		4.69	□□□□□ -1.66
CLDND1-222	ENST00000510545	KRTAP5-4	Q6L8H1	288 aa		4.55	□□□□□ -1.68
CLDND1-222	ENST00000510545	KRTAP12-4	P60329	112 aa		4.49	□□□□□ -1.69
CLDND1-222	ENST00000510545	KRTAP6-2	Q3LI66	62 aa		4.42	□□□□□ -1.7
CLDND1-222	ENST00000510545	KRTAP2-2	Q9BYT5	123 aa		4.38	□□□□□ -1.71
CLDND1-222	ENST00000510545	MT4	P47944	62 aa		4.37	□□□□□ -1.71
CLDND1-222	ENST00000510545	LCE4A	Q5TA78	99 aa		4.36	□□□□□ -1.71
CLDND1-222	ENST00000510545	LCE3D	Q9BYE3	92 aa		4.34	□□□□□ -1.71
CLDND1-222	ENST00000510545	MT3	P25713	68 aa		4.34	□□□□□ -1.71
CLDND1-222	ENST00000510545	KRTAP20-1	Q3LI63	56 aa		4.31	□□□□□ -1.72
CLDND1-222	ENST00000510545	KRTAP20-2	Q3LI61	65 aa		4.27	□□□□□ -1.73
CLDND1-222	ENST00000510545	LCE3E	Q5T5B0	92 aa		4.24	□□□□□ -1.73
CLDND1-222	ENST00000510545	OBSCN	Q5VST9	7968 aa		4.24	□□□□□ -1.73
CLDND1-222	ENST00000510545	KRTAP5-2	Q701N4	177 aa		4.16	□□□□□ -1.74
CLDND1-222	ENST00000510545	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.04	□□□□□ -1.76
CLDND1-222	ENST00000510545	PRM1	P04553	51 aa		3.98	□□□□□ -1.77
CLDND1-222	ENST00000510545	LCE1E	Q5T753	118 aa		3.7	□□□□□ -1.82
CLDND1-222	ENST00000510545	AHNAK2	Q8IVF2	5795 aa		3.68	□□□□□ -1.82
CLDND1-222	ENST00000510545	MUC5AC	P98088	5654 aa		3.65	□□□□□ -1.83
CLDND1-222	ENST00000510545	KRTAP5-1	Q6L8H4	278 aa		3.6	□□□□□ -1.83
CLDND1-222	ENST00000510545	LCE1B	Q5T7P3	118 aa		3.56	□□□□□ -1.84
CLDND1-222	ENST00000510545	KRTAP5-10	Q6L8G5	202 aa		3.53	□□□□□ -1.84
CLDND1-222	ENST00000510545	KRTAP5-8	O75690	187 aa		3.51	□□□□□ -1.85
CLDND1-222	ENST00000510545	LCE1C	Q5T751	118 aa		3.47	□□□□□ -1.85
CLDND1-222	ENST00000510545	KRTAP5-7	Q6L8G8	165 aa		3.39	□□□□□ -1.87
CLDND1-222	ENST00000510545	KRTAP4-4	Q9BYR3	166 aa		3.29	□□□□□ -1.88
CLDND1-222	ENST00000510545	GPR98	Q8WXG9	6306 aa		3.24	□□□□□ -1.89
CLDND1-222	ENST00000510545	KRTAP5-11	Q6L8G4	156 aa		3.19	□□□□□ -1.9
CLDND1-222	ENST00000510545	KRTAP21-2	Q3LI59	83 aa		3.16	□□□□□ -1.9
CLDND1-222	ENST00000510545	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.12	□□□□□ -1.91
CLDND1-222	ENST00000510545	AHNAK	Q09666	5890 aa	Known RBP	2.67	□□□□□ -1.98
CLDND1-222	ENST00000510545	LCE1F	Q5T754	118 aa		2.63	□□□□□ -1.99
CLDND1-222	ENST00000510545	PHGR1	C9JFL3	82 aa		2.62	□□□□□ -1.99
CLDND1-222	ENST00000510545	MUC19	Q7Z5P9	8384 aa		2.53	□□□□□ -2
CLDND1-222	ENST00000510545	KRTAP21-1	Q3LI58	79 aa		2.5	□□□□□ -2.01
CLDND1-222	ENST00000510545	MUC16	Q8WXI7	14507 aa		1.76	□□□□□ -2.13

Retrieved 77 of 20,778 RNA–protein pairs in 94.9 ms