RNA–Protein interactions for RNA: ENST00000505676.5

TRAPPC11-204, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best)

Gene TRAPPC11, Length 2,244 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-204ENST00000505676 KRTAP4-7Q9BYR0 210 aa5.83□□□□□ -1.48
TRAPPC11-204ENST00000505676 KRTAP9-6A8MVA2 160 aa5.83□□□□□ -1.48
TRAPPC11-204ENST00000505676 CRCT1Q9UGL9 99 aa5.81□□□□□ -1.48
TRAPPC11-204ENST00000505676 MT1MQ8N339 61 aa5.78□□□□□ -1.48
TRAPPC11-204ENST00000505676 SPRR2FQ96RM1 72 aa5.78□□□□□ -1.48
TRAPPC11-204ENST00000505676 LCE5AQ5TCM9 118 aa5.73□□□□□ -1.49
TRAPPC11-204ENST00000505676 KRTAP5-9P26371 169 aa5.67□□□□□ -1.5
TRAPPC11-204ENST00000505676 KRTAP2-3P0C7H8 128 aa5.64□□□□□ -1.51
TRAPPC11-204ENST00000505676 KRTAP2-4Q9BYR9 128 aa5.64□□□□□ -1.51
TRAPPC11-204ENST00000505676 KRTAP2-1Q9BYU5 128 aa5.64□□□□□ -1.51
TRAPPC11-204ENST00000505676 INE1O15225 51 aa5.64□□□□□ -1.51
TRAPPC11-204ENST00000505676 KRTAP4-3Q9BYR4 195 aa5.58□□□□□ -1.52
TRAPPC11-204ENST00000505676 MACF1Q9UPN3 7388 aaKnown RBP5.56□□□□□ -1.52
TRAPPC11-204ENST00000505676 MUC12Q9UKN1 5478 aa5.5□□□□□ -1.53
TRAPPC11-204ENST00000505676 LCE1AQ5T7P2 110 aa5.49□□□□□ -1.53
TRAPPC11-204ENST00000505676 LOC100996750A0A140TA64 210 aa5.47□□□□□ -1.53
TRAPPC11-204ENST00000505676 SPRR2EP22531 72 aa5.41□□□□□ -1.54
TRAPPC11-204ENST00000505676 SPRR2BP35325 72 aa5.41□□□□□ -1.54
TRAPPC11-204ENST00000505676 SPRR2AP35326 72 aa5.41□□□□□ -1.54
TRAPPC11-204ENST00000505676 KRTAP6-3Q3LI67 103 aa5.41□□□□□ -1.54
TRAPPC11-204ENST00000505676 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.35□□□□□ -1.55
TRAPPC11-204ENST00000505676 KRTAP9-6A0A140TA67 174 aa5.34□□□□□ -1.55
TRAPPC11-204ENST00000505676 SYNE2Q8WXH0 6885 aaKnown RBP5.3□□□□□ -1.56
TRAPPC11-204ENST00000505676 MT1AP04731 61 aa5.22□□□□□ -1.57
TRAPPC11-204ENST00000505676 SPRR2DP22532 72 aa5.21□□□□□ -1.57
TRAPPC11-204ENST00000505676 KRTAP5-5Q701N2 237 aaPredicted RBP5.2□□□□□ -1.58
TRAPPC11-204ENST00000505676 MDN1Q9NU22 5596 aa5.16□□□□□ -1.58
TRAPPC11-204ENST00000505676 KRTAP6-1Q3LI64 71 aa5.09□□□□□ -1.59
TRAPPC11-204ENST00000505676 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
TRAPPC11-204ENST00000505676 LCE3BQ5TA77 95 aa5.02□□□□□ -1.61
TRAPPC11-204ENST00000505676 KRTAP9-7A8MTY7 169 aa4.93□□□□□ -1.62
TRAPPC11-204ENST00000505676 KRTAP9-4Q9BYQ2 154 aa4.92□□□□□ -1.62
TRAPPC11-204ENST00000505676 NEBP20929 6669 aa4.84□□□□□ -1.63
TRAPPC11-204ENST00000505676 KRTAP12-4P60329 112 aa4.82□□□□□ -1.64
TRAPPC11-204ENST00000505676 KRTAP5-4Q6L8H1 288 aa4.82□□□□□ -1.64
TRAPPC11-204ENST00000505676 LCE3DQ9BYE3 92 aa4.76□□□□□ -1.65
TRAPPC11-204ENST00000505676 SYNE1Q8NF91 8797 aaKnown RBP4.75□□□□□ -1.65
TRAPPC11-204ENST00000505676 MT3P25713 68 aa4.73□□□□□ -1.65
TRAPPC11-204ENST00000505676 KRTAP4-9Q9BYQ8 210 aa4.72□□□□□ -1.65
TRAPPC11-204ENST00000505676 LCE4AQ5TA78 99 aa4.7□□□□□ -1.66
TRAPPC11-204ENST00000505676 LCE3EQ5T5B0 92 aa4.68□□□□□ -1.66
TRAPPC11-204ENST00000505676 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
TRAPPC11-204ENST00000505676 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
TRAPPC11-204ENST00000505676 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
TRAPPC11-204ENST00000505676 MT4P47944 62 aa4.45□□□□□ -1.7
TRAPPC11-204ENST00000505676 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
TRAPPC11-204ENST00000505676 KRTAP20-1Q3LI63 56 aa4.44□□□□□ -1.7
TRAPPC11-204ENST00000505676 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
TRAPPC11-204ENST00000505676 LCE1DQ5T752 114 aa4.34□□□□□ -1.72
TRAPPC11-204ENST00000505676 KRTAP5-3Q6L8H2 238 aa4.29□□□□□ -1.72
TRAPPC11-204ENST00000505676 PRM1P04553 51 aa4.18□□□□□ -1.74
TRAPPC11-204ENST00000505676 HMCN1Q96RW7 5635 aa4.17□□□□□ -1.74
TRAPPC11-204ENST00000505676 OBSCNQ5VST9 7968 aa4.13□□□□□ -1.75
TRAPPC11-204ENST00000505676 LCE1EQ5T753 118 aa4.06□□□□□ -1.76
TRAPPC11-204ENST00000505676 KRTAP5-10Q6L8G5 202 aa3.79□□□□□ -1.8
TRAPPC11-204ENST00000505676 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
TRAPPC11-204ENST00000505676 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
TRAPPC11-204ENST00000505676 LCE1BQ5T7P3 118 aa3.76□□□□□ -1.81
TRAPPC11-204ENST00000505676 KRTAP5-1Q6L8H4 278 aa3.75□□□□□ -1.81
TRAPPC11-204ENST00000505676 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
TRAPPC11-204ENST00000505676 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
TRAPPC11-204ENST00000505676 KRTAP5-8O75690 187 aa3.66□□□□□ -1.82
TRAPPC11-204ENST00000505676 KRTAP5-7Q6L8G8 165 aa3.65□□□□□ -1.83
TRAPPC11-204ENST00000505676 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
TRAPPC11-204ENST00000505676 GPR98Q8WXG9 6306 aa3.57□□□□□ -1.84
TRAPPC11-204ENST00000505676 AHNAK2Q8IVF2 5795 aa3.56□□□□□ -1.84
TRAPPC11-204ENST00000505676 KRTAP21-2Q3LI59 83 aa3.34□□□□□ -1.87
TRAPPC11-204ENST00000505676 KRTAP5-11Q6L8G4 156 aa3.29□□□□□ -1.88
TRAPPC11-204ENST00000505676 KRTAP9-9Q9BYP9 154 aa3.23□□□□□ -1.89
TRAPPC11-204ENST00000505676 KRTAP4-12Q9BQ66 201 aa3.07□□□□□ -1.92
TRAPPC11-204ENST00000505676 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
TRAPPC11-204ENST00000505676 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
TRAPPC11-204ENST00000505676 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
TRAPPC11-204ENST00000505676 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
TRAPPC11-204ENST00000505676 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.98
TRAPPC11-204ENST00000505676 KRTAP21-1Q3LI58 79 aa2.66□□□□□ -1.98
TRAPPC11-204ENST00000505676 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
TRAPPC11-204ENST00000505676 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 80.1 ms