RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
SNRNP200-208ENST00000497539 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.06□□□□□ -1.76
SNRNP200-208ENST00000497539 MT1LQ93083 61 aa4.06□□□□□ -1.76
SNRNP200-208ENST00000497539 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
SNRNP200-208ENST00000497539 KRTAP2-2Q9BYT5 123 aa4.02□□□□□ -1.77
SNRNP200-208ENST00000497539 MACF1Q9UPN3 7388 aaKnown RBP3.99□□□□□ -1.77
SNRNP200-208ENST00000497539 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
SNRNP200-208ENST00000497539 KRTAP2-3P0C7H8 128 aa3.97□□□□□ -1.77
SNRNP200-208ENST00000497539 KRTAP2-4Q9BYR9 128 aa3.97□□□□□ -1.77
SNRNP200-208ENST00000497539 KRTAP2-1Q9BYU5 128 aa3.97□□□□□ -1.77
SNRNP200-208ENST00000497539 KRTAP9-7A8MTY7 169 aa3.95□□□□□ -1.78
SNRNP200-208ENST00000497539 KRTAP19-3Q7Z4W3 81 aa3.9□□□□□ -1.78
SNRNP200-208ENST00000497539 MT1GP13640 62 aa3.89□□□□□ -1.79
SNRNP200-208ENST00000497539 MT1MQ8N339 61 aa3.85□□□□□ -1.79
SNRNP200-208ENST00000497539 LCE5AQ5TCM9 118 aa3.83□□□□□ -1.8
SNRNP200-208ENST00000497539 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
SNRNP200-208ENST00000497539 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
SNRNP200-208ENST00000497539 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
SNRNP200-208ENST00000497539 MUC12Q9UKN1 5478 aa3.78□□□□□ -1.8
SNRNP200-208ENST00000497539 LOC100996750A0A140TA64 210 aa3.74□□□□□ -1.81
SNRNP200-208ENST00000497539 LCE1AQ5T7P2 110 aa3.73□□□□□ -1.81
SNRNP200-208ENST00000497539 KRTAP4-3Q9BYR4 195 aa3.72□□□□□ -1.81
SNRNP200-208ENST00000497539 MDN1Q9NU22 5596 aa3.69□□□□□ -1.82
SNRNP200-208ENST00000497539 DSTQ03001 7570 aaKnown RBP3.68□□□□□ -1.82
SNRNP200-208ENST00000497539 NEBP20929 6669 aa3.65□□□□□ -1.82
SNRNP200-208ENST00000497539 KRTAP4-6Q9BYQ5 205 aa3.65□□□□□ -1.83
SNRNP200-208ENST00000497539 KRTAP12-4P60329 112 aa3.63□□□□□ -1.83
SNRNP200-208ENST00000497539 SPRR2EP22531 72 aa3.57□□□□□ -1.84
SNRNP200-208ENST00000497539 SPRR2BP35325 72 aa3.57□□□□□ -1.84
SNRNP200-208ENST00000497539 SPRR2AP35326 72 aa3.57□□□□□ -1.84
SNRNP200-208ENST00000497539 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
SNRNP200-208ENST00000497539 KRTAP5-5Q701N2 237 aaPredicted RBP3.51□□□□□ -1.85
SNRNP200-208ENST00000497539 KRTAP4-12Q9BQ66 201 aa3.48□□□□□ -1.85
SNRNP200-208ENST00000497539 MT1AP04731 61 aa3.47□□□□□ -1.85
SNRNP200-208ENST00000497539 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
SNRNP200-208ENST00000497539 KRTAP4-9Q9BYQ8 210 aa3.46□□□□□ -1.86
SNRNP200-208ENST00000497539 SYNE1Q8NF91 8797 aaKnown RBP3.45□□□□□ -1.86
SNRNP200-208ENST00000497539 SPRR2DP22532 72 aa3.45□□□□□ -1.86
SNRNP200-208ENST00000497539 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
SNRNP200-208ENST00000497539 LCE1DQ5T752 114 aa3.4□□□□□ -1.86
SNRNP200-208ENST00000497539 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
SNRNP200-208ENST00000497539 KRTAP6-1Q3LI64 71 aa3.39□□□□□ -1.87
SNRNP200-208ENST00000497539 PRM1P04553 51 aa3.31□□□□□ -1.88
SNRNP200-208ENST00000497539 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
SNRNP200-208ENST00000497539 KRTAP9-4Q9BYQ2 154 aa3.27□□□□□ -1.89
SNRNP200-208ENST00000497539 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
SNRNP200-208ENST00000497539 OBSCNQ5VST9 7968 aa3.26□□□□□ -1.89
SNRNP200-208ENST00000497539 KRTAP9-9Q9BYP9 154 aa3.25□□□□□ -1.89
SNRNP200-208ENST00000497539 LCE3DQ9BYE3 92 aa3.22□□□□□ -1.89
SNRNP200-208ENST00000497539 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
SNRNP200-208ENST00000497539 MT3P25713 68 aa3.1□□□□□ -1.91
SNRNP200-208ENST00000497539 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
SNRNP200-208ENST00000497539 MT4P47944 62 aa3.02□□□□□ -1.93
SNRNP200-208ENST00000497539 KRTAP5-2Q701N4 177 aa3□□□□□ -1.93
SNRNP200-208ENST00000497539 KRTAP20-2Q3LI61 65 aa2.98□□□□□ -1.93
SNRNP200-208ENST00000497539 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
SNRNP200-208ENST00000497539 KRTAP4-11Q9BYQ6 195 aa2.95□□□□□ -1.94
SNRNP200-208ENST00000497539 KRTAP5-3Q6L8H2 238 aa2.9□□□□□ -1.94
SNRNP200-208ENST00000497539 KRTAP4-2Q9BYR5 136 aa2.86□□□□□ -1.95
SNRNP200-208ENST00000497539 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.95
SNRNP200-208ENST00000497539 AHNAK2Q8IVF2 5795 aa2.8□□□□□ -1.96
SNRNP200-208ENST00000497539 KRTAP5-10Q6L8G5 202 aa2.72□□□□□ -1.97
SNRNP200-208ENST00000497539 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
SNRNP200-208ENST00000497539 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
SNRNP200-208ENST00000497539 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
SNRNP200-208ENST00000497539 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
SNRNP200-208ENST00000497539 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
SNRNP200-208ENST00000497539 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
SNRNP200-208ENST00000497539 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
SNRNP200-208ENST00000497539 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
SNRNP200-208ENST00000497539 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
SNRNP200-208ENST00000497539 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
SNRNP200-208ENST00000497539 AHNAKQ09666 5890 aaKnown RBP2.24□□□□□ -2.05
SNRNP200-208ENST00000497539 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
SNRNP200-208ENST00000497539 KRTAP5-11Q6L8G4 156 aa2.2□□□□□ -2.06
SNRNP200-208ENST00000497539 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
SNRNP200-208ENST00000497539 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
SNRNP200-208ENST00000497539 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 6.4 ms