RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	SEC61G	P60059	68 aa		2.89	□□□□□ -1.95
RBM39-238	ENST00000493853	SERP1	Q9Y6X1	66 aa		2.88	□□□□□ -1.95
RBM39-238	ENST00000493853	KRTAP13-4	Q3LI77	160 aa		2.87	□□□□□ -1.95
RBM39-238	ENST00000493853	SERP2	Q8N6R1	65 aa		2.86	□□□□□ -1.95
RBM39-238	ENST00000493853		A0A0D9SG42	100 aa		2.85	□□□□□ -1.95
RBM39-238	ENST00000493853	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.85	□□□□□ -1.95
RBM39-238	ENST00000493853	COA5	Q86WW8	74 aa		2.84	□□□□□ -1.95
RBM39-238	ENST00000493853	SPINT4	Q6UDR6	99 aa		2.83	□□□□□ -1.96
RBM39-238	ENST00000493853	SPATA8	Q6RVD6	105 aa		2.8	□□□□□ -1.96
RBM39-238	ENST00000493853		A0A1B0GU33	70 aa		2.79	□□□□□ -1.96
RBM39-238	ENST00000493853	MT1E	P04732	61 aa		2.79	□□□□□ -1.96
RBM39-238	ENST00000493853	KRTAP19-7	Q3SYF9	63 aa		2.79	□□□□□ -1.96
RBM39-238	ENST00000493853	KRTAP19-3	Q7Z4W3	81 aa		2.79	□□□□□ -1.96
RBM39-238	ENST00000493853	KRTAP5-2	Q701N4	177 aa		2.78	□□□□□ -1.96
RBM39-238	ENST00000493853	CYSTM1	Q9H1C7	97 aa		2.77	□□□□□ -1.97
RBM39-238	ENST00000493853	PP632	Q6XCG6	107 aa		2.75	□□□□□ -1.97
RBM39-238	ENST00000493853	SMIM26	A0A096LP01	95 aa		2.74	□□□□□ -1.97
RBM39-238	ENST00000493853	MT1G	P13640	62 aa		2.74	□□□□□ -1.97
RBM39-238	ENST00000493853	COX7C	P15954	63 aa		2.74	□□□□□ -1.97
RBM39-238	ENST00000493853	KRTAP12-1	P59990	96 aa		2.74	□□□□□ -1.97
RBM39-238	ENST00000493853	KRTAP19-5	Q3LI72	72 aa		2.74	□□□□□ -1.97
RBM39-238	ENST00000493853		A0A1B0GU69	56 aa		2.72	□□□□□ -1.97
RBM39-238	ENST00000493853	LCE1C	Q5T751	118 aa		2.72	□□□□□ -1.97
RBM39-238	ENST00000493853	LCE1B	Q5T7P3	118 aa		2.72	□□□□□ -1.97
RBM39-238	ENST00000493853		H7BZZ5	65 aa		2.7	□□□□□ -1.98
RBM39-238	ENST00000493853	TNP1	P09430	55 aa		2.68	□□□□□ -1.98
RBM39-238	ENST00000493853	DST	Q03001	7570 aa	Known RBP	2.67	□□□□□ -1.98
RBM39-238	ENST00000493853	MT1M	Q8N339	61 aa		2.67	□□□□□ -1.98
RBM39-238	ENST00000493853	MT4	P47944	62 aa		2.66	□□□□□ -1.98
RBM39-238	ENST00000493853	MT1L	Q93083	61 aa		2.66	□□□□□ -1.98
RBM39-238	ENST00000493853	C10orf95	Q9H7T3	257 aa		2.65	□□□□□ -1.99
RBM39-238	ENST00000493853	PRR15L	Q9BU68	103 aa		2.64	□□□□□ -1.99
RBM39-238	ENST00000493853	LCE3D	Q9BYE3	92 aa		2.63	□□□□□ -1.99
RBM39-238	ENST00000493853	ANAPC13	Q9BS18	74 aa		2.62	□□□□□ -1.99
RBM39-238	ENST00000493853	GPR98	Q8WXG9	6306 aa		2.57	□□□□□ -2
RBM39-238	ENST00000493853	HMCN1	Q96RW7	5635 aa		2.56	□□□□□ -2
RBM39-238	ENST00000493853	ATP5E	P56381	51 aa	Predicted RBP	2.56	□□□□□ -2
RBM39-238	ENST00000493853	KRTAP12-3	P60328	96 aa		2.56	□□□□□ -2
RBM39-238	ENST00000493853	LINC01558	Q9Y6Z2	57 aa		2.54	□□□□□ -2
RBM39-238	ENST00000493853	CCDC179	H3BU77	68 aa		2.53	□□□□□ -2
RBM39-238	ENST00000493853	UQCR11	O14957	56 aa		2.53	□□□□□ -2
RBM39-238	ENST00000493853	KRTAP5-10	Q6L8G5	202 aa		2.5	□□□□□ -2.01
RBM39-238	ENST00000493853		K7ERS5	55 aa		2.49	□□□□□ -2.01
RBM39-238	ENST00000493853	KRTAP25-1	Q3LHN0	102 aa		2.48	□□□□□ -2.01
RBM39-238	ENST00000493853	AHNAK2	Q8IVF2	5795 aa		2.46	□□□□□ -2.02
RBM39-238	ENST00000493853	KRTAP12-4	P60329	112 aa		2.46	□□□□□ -2.02
RBM39-238	ENST00000493853	MIR22HG	Q0VDD5	57 aa		2.46	□□□□□ -2.02
RBM39-238	ENST00000493853	TMEM258	P61165	79 aa		2.45	□□□□□ -2.02
RBM39-238	ENST00000493853	SPRR5	A0A1B0GTR4	108 aa		2.44	□□□□□ -2.02
RBM39-238	ENST00000493853	KRTAP20-2	Q3LI61	65 aa		2.44	□□□□□ -2.02
RBM39-238	ENST00000493853	KRTAP5-7	Q6L8G8	165 aa		2.42	□□□□□ -2.02
RBM39-238	ENST00000493853		V9GYY9	64 aa		2.38	□□□□□ -2.03
RBM39-238	ENST00000493853	PSPHP1	O15172	72 aa		2.37	□□□□□ -2.03
RBM39-238	ENST00000493853		Q1T7F1	81 aa		2.31	□□□□□ -2.04
RBM39-238	ENST00000493853	CDC42SE1	Q9NRR8	79 aa		2.31	□□□□□ -2.04
RBM39-238	ENST00000493853		A6NED7	52 aa		2.3	□□□□□ -2.04
RBM39-238	ENST00000493853	KRTAP5-8	O75690	187 aa		2.29	□□□□□ -2.04
RBM39-238	ENST00000493853	RPS28	P62857	69 aa	Known RBP	2.29	□□□□□ -2.04
RBM39-238	ENST00000493853	SYNE1	Q8NF91	8797 aa	Known RBP	2.28	□□□□□ -2.04
RBM39-238	ENST00000493853	MT1A	P04731	61 aa		2.26	□□□□□ -2.05
RBM39-238	ENST00000493853	ROMO1	P60602	79 aa		2.25	□□□□□ -2.05
RBM39-238	ENST00000493853	KRTAP6-1	Q3LI64	71 aa		2.25	□□□□□ -2.05
RBM39-238	ENST00000493853	MUC19	Q7Z5P9	8384 aa		2.24	□□□□□ -2.05
RBM39-238	ENST00000493853	KRTAP6-2	Q3LI66	62 aa		2.18	□□□□□ -2.06
RBM39-238	ENST00000493853	MUC5AC	P98088	5654 aa		2.04	□□□□□ -2.08
RBM39-238	ENST00000493853	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.04	□□□□□ -2.08
RBM39-238	ENST00000493853	PRO0628	Q9UI54	55 aa		2.04	□□□□□ -2.08
RBM39-238	ENST00000493853	AHNAK	Q09666	5890 aa	Known RBP	2.02	□□□□□ -2.09
RBM39-238	ENST00000493853	LUZP6	Q538Z0	58 aa		2.01	□□□□□ -2.09
RBM39-238	ENST00000493853	KRTAP21-2	Q3LI59	83 aa		1.93	□□□□□ -2.1
RBM39-238	ENST00000493853	PMAIP1	Q13794	54 aa		1.91	□□□□□ -2.1
RBM39-238	ENST00000493853	BRK1	Q8WUW1	75 aa		1.87	□□□□□ -2.11
RBM39-238	ENST00000493853	KTN1-AS1	Q86SY8	53 aa		1.72	□□□□□ -2.13
RBM39-238	ENST00000493853	PHGR1	C9JFL3	82 aa		1.5	□□□□□ -2.17
RBM39-238	ENST00000493853	INE1	O15225	51 aa		1.3	□□□□□ -2.2
RBM39-238	ENST00000493853	KRTAP21-1	Q3LI58	79 aa		1.14	□□□□□ -2.23
RBM39-238	ENST00000493853	PRM1	P04553	51 aa		1.13	□□□□□ -2.23
RBM39-238	ENST00000493853	MUC16	Q8WXI7	14507 aa		1.03	□□□□□ -2.24

Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms