RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PP632Q6XCG6 107 aa6.36□□□□□ -1.39
COL9A3-214ENST00000490398 KRTAP4-3Q9BYR4 195 aa6.36□□□□□ -1.39
COL9A3-214ENST00000490398 KRTAP4-9Q9BYQ8 210 aa6.34□□□□□ -1.39
COL9A3-214ENST00000490398 PSPHP1O15172 72 aa6.32□□□□□ -1.4
COL9A3-214ENST00000490398 HMCN1Q96RW7 5635 aa6.28□□□□□ -1.4
COL9A3-214ENST00000490398 Q1T7F1 81 aa6.27□□□□□ -1.41
COL9A3-214ENST00000490398 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
COL9A3-214ENST00000490398 KRTAP4-7Q9BYR0 210 aa6.24□□□□□ -1.41
COL9A3-214ENST00000490398 V9GYY9 64 aa6.23□□□□□ -1.41
COL9A3-214ENST00000490398 KRTAP25-1Q3LHN0 102 aa6.17□□□□□ -1.42
COL9A3-214ENST00000490398 LCE1DQ5T752 114 aa6.17□□□□□ -1.42
COL9A3-214ENST00000490398 K7ERS5 55 aa6.13□□□□□ -1.43
COL9A3-214ENST00000490398 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
COL9A3-214ENST00000490398 MT4P47944 62 aa6.11□□□□□ -1.43
COL9A3-214ENST00000490398 AHNAK2Q8IVF2 5795 aa6.11□□□□□ -1.43
COL9A3-214ENST00000490398 KRTAP5-4Q6L8H1 288 aa6.08□□□□□ -1.44
COL9A3-214ENST00000490398 A6NED7 52 aa6.06□□□□□ -1.44
COL9A3-214ENST00000490398 KRTAP4-6Q9BYQ5 205 aa5.99□□□□□ -1.45
COL9A3-214ENST00000490398 PCP4P48539 62 aa5.97□□□□□ -1.45
COL9A3-214ENST00000490398 RPS28P62857 69 aaKnown RBP5.96□□□□□ -1.46
COL9A3-214ENST00000490398 SYNE1Q8NF91 8797 aaKnown RBP5.93□□□□□ -1.46
COL9A3-214ENST00000490398 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
COL9A3-214ENST00000490398 LOC100996750A0A140TA64 210 aa5.9□□□□□ -1.46
COL9A3-214ENST00000490398 KRTAP5-5Q701N2 237 aaPredicted RBP5.9□□□□□ -1.46
COL9A3-214ENST00000490398 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
COL9A3-214ENST00000490398 CDC42SE1Q9NRR8 79 aa5.86□□□□□ -1.47
COL9A3-214ENST00000490398 ROMO1P60602 79 aa5.83□□□□□ -1.48
COL9A3-214ENST00000490398 LCE3CQ5T5A8 94 aa5.78□□□□□ -1.48
COL9A3-214ENST00000490398 KRTAP19-4Q3LI73 84 aa5.77□□□□□ -1.49
COL9A3-214ENST00000490398 KRTAP20-2Q3LI61 65 aa5.73□□□□□ -1.49
COL9A3-214ENST00000490398 SVIPQ8NHG7 77 aa5.72□□□□□ -1.49
COL9A3-214ENST00000490398 KRTAP5-10Q6L8G5 202 aa5.69□□□□□ -1.5
COL9A3-214ENST00000490398 SPRR5A0A1B0GTR4 108 aa5.66□□□□□ -1.5
COL9A3-214ENST00000490398 KRTAP12-4P60329 112 aa5.63□□□□□ -1.51
COL9A3-214ENST00000490398 KRTAP5-3Q6L8H2 238 aa5.58□□□□□ -1.52
COL9A3-214ENST00000490398 KRTAP9-6A8MVA2 160 aa5.55□□□□□ -1.52
COL9A3-214ENST00000490398 KRTAP6-1Q3LI64 71 aa5.5□□□□□ -1.53
COL9A3-214ENST00000490398 MT1AP04731 61 aa5.48□□□□□ -1.53
COL9A3-214ENST00000490398 KRTAP5-7Q6L8G8 165 aa5.42□□□□□ -1.54
COL9A3-214ENST00000490398 KRTAP5-2Q701N4 177 aa5.35□□□□□ -1.55
COL9A3-214ENST00000490398 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
COL9A3-214ENST00000490398 BRK1Q8WUW1 75 aa5.25□□□□□ -1.57
COL9A3-214ENST00000490398 KRTAP6-2Q3LI66 62 aa5.22□□□□□ -1.57
COL9A3-214ENST00000490398 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
COL9A3-214ENST00000490398 KRTAP4-11Q9BYQ6 195 aa5.2□□□□□ -1.58
COL9A3-214ENST00000490398 AHNAKQ09666 5890 aaKnown RBP5.07□□□□□ -1.6
COL9A3-214ENST00000490398 KRTAP5-8O75690 187 aa5.05□□□□□ -1.6
COL9A3-214ENST00000490398 MUC5BQ9HC84 5762 aaPredicted RBP5.01□□□□□ -1.61
COL9A3-214ENST00000490398 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
COL9A3-214ENST00000490398 MT3P25713 68 aa4.98□□□□□ -1.61
COL9A3-214ENST00000490398 PMAIP1Q13794 54 aa4.91□□□□□ -1.62
COL9A3-214ENST00000490398 PRAC1Q96KF2 57 aa4.85□□□□□ -1.63
COL9A3-214ENST00000490398 KRTAP5-1Q6L8H4 278 aa4.79□□□□□ -1.64
COL9A3-214ENST00000490398 KRTAP9-9Q9BYP9 154 aa4.7□□□□□ -1.66
COL9A3-214ENST00000490398 LCE1EQ5T753 118 aa4.54□□□□□ -1.68
COL9A3-214ENST00000490398 PRO0628Q9UI54 55 aa4.54□□□□□ -1.68
COL9A3-214ENST00000490398 H3BS24 57 aa4.45□□□□□ -1.7
COL9A3-214ENST00000490398 KRTAP4-2Q9BYR5 136 aa4.37□□□□□ -1.71
COL9A3-214ENST00000490398 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
COL9A3-214ENST00000490398 LCE1BQ5T7P3 118 aa4.33□□□□□ -1.72
COL9A3-214ENST00000490398 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
COL9A3-214ENST00000490398 LCE1CQ5T751 118 aa4.23□□□□□ -1.73
COL9A3-214ENST00000490398 LCE3DQ9BYE3 92 aa4.16□□□□□ -1.74
COL9A3-214ENST00000490398 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
COL9A3-214ENST00000490398 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
COL9A3-214ENST00000490398 LUZP6Q538Z0 58 aa3.9□□□□□ -1.79
COL9A3-214ENST00000490398 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.87□□□□□ -1.79
COL9A3-214ENST00000490398 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
COL9A3-214ENST00000490398 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
COL9A3-214ENST00000490398 KRTAP21-2Q3LI59 83 aa3.62□□□□□ -1.83
COL9A3-214ENST00000490398 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
COL9A3-214ENST00000490398 PHGR1C9JFL3 82 aa3.32□□□□□ -1.88
COL9A3-214ENST00000490398 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
COL9A3-214ENST00000490398 NDUFAF8A1L188 74 aa3.23□□□□□ -1.89
COL9A3-214ENST00000490398 PRM1P04553 51 aa3.02□□□□□ -1.93
COL9A3-214ENST00000490398 INE1O15225 51 aa2.7□□□□□ -1.98
COL9A3-214ENST00000490398 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
COL9A3-214ENST00000490398 MUC16Q8WXI7 14507 aa2.22□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 110.7 ms