RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 FLGP20930 4061 aaPredicted RBP2.32□□□□□ -2.04
SYNE1-228ENST00000490135 MT4P47944 62 aa2.31□□□□□ -2.04
SYNE1-228ENST00000490135 LCE1DQ5T752 114 aa2.28□□□□□ -2.04
SYNE1-228ENST00000490135 MUC17Q685J3 4493 aa2.28□□□□□ -2.04
SYNE1-228ENST00000490135 KRTAP19-3Q7Z4W3 81 aa2.28□□□□□ -2.05
SYNE1-228ENST00000490135 KRTAP4-8A0A0G2JLE6 195 aa2.27□□□□□ -2.05
SYNE1-228ENST00000490135 KRTAP4-8Q9BYQ9 185 aa2.27□□□□□ -2.05
SYNE1-228ENST00000490135 KRTAP4-7Q9BYR0 210 aa2.26□□□□□ -2.05
SYNE1-228ENST00000490135 MT1BP07438 61 aa2.23□□□□□ -2.05
SYNE1-228ENST00000490135 KRTAP20-1Q3LI63 56 aa2.23□□□□□ -2.05
SYNE1-228ENST00000490135 MT1LQ93083 61 aa2.23□□□□□ -2.05
SYNE1-228ENST00000490135 KRTAP9-7A8MTY7 169 aa2.22□□□□□ -2.05
SYNE1-228ENST00000490135 LCE5AQ5TCM9 118 aa2.21□□□□□ -2.06
SYNE1-228ENST00000490135 KRTAP19-2Q3LHN2 52 aa2.2□□□□□ -2.06
SYNE1-228ENST00000490135 LCE1AQ5T7P2 110 aa2.15□□□□□ -2.07
SYNE1-228ENST00000490135 MT1EP04732 61 aa2.14□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP9-6A8MVA2 160 aa2.14□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP9-8Q9BYQ0 159 aa2.14□□□□□ -2.07
SYNE1-228ENST00000490135 LOC100996750A0A140TA64 210 aa2.13□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP9-3Q9BYQ3 159 aa2.13□□□□□ -2.07
SYNE1-228ENST00000490135 MT1MQ8N339 61 aa2.12□□□□□ -2.07
SYNE1-228ENST00000490135 LCE1CQ5T751 118 aa2.11□□□□□ -2.07
SYNE1-228ENST00000490135 LCE1EQ5T753 118 aa2.11□□□□□ -2.07
SYNE1-228ENST00000490135 LCE1FQ5T754 118 aa2.11□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP19-6Q3LI70 58 aa2.1□□□□□ -2.07
SYNE1-228ENST00000490135 USH2AO75445 5202 aa2.09□□□□□ -2.07
SYNE1-228ENST00000490135 FSIP2Q5CZC0 6907 aa2.09□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP4-9Q9BYQ8 210 aa2.09□□□□□ -2.07
SYNE1-228ENST00000490135 KRTAP6-3Q3LI67 103 aa2.07□□□□□ -2.08
SYNE1-228ENST00000490135 MT1AP04731 61 aa2.05□□□□□ -2.08
SYNE1-228ENST00000490135 KRTAP2-2Q9BYT5 123 aa2.05□□□□□ -2.08
SYNE1-228ENST00000490135 KRTAP6-2Q3LI66 62 aa2.05□□□□□ -2.08
SYNE1-228ENST00000490135 KRTAP9-1A8MXZ3 250 aaPredicted RBP2□□□□□ -2.09
SYNE1-228ENST00000490135 KRTAP4-3Q9BYR4 195 aa2□□□□□ -2.09
SYNE1-228ENST00000490135 SSPOA2VEC9 5147 aa1.98□□□□□ -2.09
SYNE1-228ENST00000490135 LCE4AQ5TA78 99 aa1.98□□□□□ -2.09
SYNE1-228ENST00000490135 GPR98Q8WXG9 6306 aa1.96□□□□□ -2.1
SYNE1-228ENST00000490135 KRTAP19-7Q3SYF9 63 aa1.94□□□□□ -2.1
SYNE1-228ENST00000490135 FCGBPQ9Y6R7 5405 aaPredicted RBP1.91□□□□□ -2.1
SYNE1-228ENST00000490135 KRTAP4-6Q9BYQ5 205 aa1.91□□□□□ -2.1
SYNE1-228ENST00000490135 KRTAP9-4Q9BYQ2 154 aa1.86□□□□□ -2.11
SYNE1-228ENST00000490135 KMT2DO14686 5537 aa1.86□□□□□ -2.11
SYNE1-228ENST00000490135 MACF1Q9UPN3 7388 aaKnown RBP1.84□□□□□ -2.11
SYNE1-228ENST00000490135 KRTAP6-1Q3LI64 71 aa1.82□□□□□ -2.12
SYNE1-228ENST00000490135 KRTAP9-9Q9BYP9 154 aa1.82□□□□□ -2.12
SYNE1-228ENST00000490135 MUC12Q9UKN1 5478 aa1.82□□□□□ -2.12
SYNE1-228ENST00000490135 KRTAP5-5Q701N2 237 aaPredicted RBP1.81□□□□□ -2.12
SYNE1-228ENST00000490135 SYNE1Q8NF91 8797 aaKnown RBP1.79□□□□□ -2.12
SYNE1-228ENST00000490135 SYNE2Q8WXH0 6885 aaKnown RBP1.79□□□□□ -2.12
SYNE1-228ENST00000490135 NEBP20929 6669 aa1.78□□□□□ -2.12
SYNE1-228ENST00000490135 MDN1Q9NU22 5596 aa1.77□□□□□ -2.13
SYNE1-228ENST00000490135 OBSCNQ5VST9 7968 aa1.74□□□□□ -2.13
SYNE1-228ENST00000490135 KRTAP4-11Q9BYQ6 195 aa1.73□□□□□ -2.13
SYNE1-228ENST00000490135 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
SYNE1-228ENST00000490135 KRTAP20-2Q3LI61 65 aa1.68□□□□□ -2.14
SYNE1-228ENST00000490135 KRTAP4-12Q9BQ66 201 aa1.66□□□□□ -2.14
SYNE1-228ENST00000490135 DSTQ03001 7570 aaKnown RBP1.63□□□□□ -2.15
SYNE1-228ENST00000490135 KRTAP5-9P26371 169 aa1.58□□□□□ -2.16
SYNE1-228ENST00000490135 KRTAP4-2Q9BYR5 136 aa1.53□□□□□ -2.16
SYNE1-228ENST00000490135 KRTAP4-4Q9BYR3 166 aa1.52□□□□□ -2.17
SYNE1-228ENST00000490135 KRTAP5-4Q6L8H1 288 aa1.48□□□□□ -2.17
SYNE1-228ENST00000490135 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
SYNE1-228ENST00000490135 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.17
SYNE1-228ENST00000490135 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.19
SYNE1-228ENST00000490135 KRTAP5-3Q6L8H2 238 aa1.37□□□□□ -2.19
SYNE1-228ENST00000490135 KRTAP5-7Q6L8G8 165 aa1.31□□□□□ -2.2
SYNE1-228ENST00000490135 KRTAP5-2Q701N4 177 aa1.26□□□□□ -2.21
SYNE1-228ENST00000490135 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
SYNE1-228ENST00000490135 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
SYNE1-228ENST00000490135 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
SYNE1-228ENST00000490135 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
SYNE1-228ENST00000490135 MUC5ACP98088 5654 aa1.19□□□□□ -2.22
SYNE1-228ENST00000490135 KRTAP5-8O75690 187 aa1.1□□□□□ -2.23
SYNE1-228ENST00000490135 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.09□□□□□ -2.24
SYNE1-228ENST00000490135 KRTAP5-11Q6L8G4 156 aa1.03□□□□□ -2.24
SYNE1-228ENST00000490135 KRTAP5-1Q6L8H4 278 aa1.02□□□□□ -2.25
SYNE1-228ENST00000490135 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
SYNE1-228ENST00000490135 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 71.3 ms