RNA–Protein interactions for RNA: ENST00000484252.5

LIMS2-215, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,099 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-215ENST00000484252 KRTAP2-4Q9BYR9 128 aa6.75□□□□□ -1.33
LIMS2-215ENST00000484252 KRTAP2-1Q9BYU5 128 aa6.75□□□□□ -1.33
LIMS2-215ENST00000484252 KRTAP9-2Q9BYQ4 174 aa6.63□□□□□ -1.35
LIMS2-215ENST00000484252 FCGBPQ9Y6R7 5405 aaPredicted RBP6.44□□□□□ -1.38
LIMS2-215ENST00000484252 MT1GP13640 62 aa6.4□□□□□ -1.38
LIMS2-215ENST00000484252 KRTAP19-3Q7Z4W3 81 aa6.4□□□□□ -1.38
LIMS2-215ENST00000484252 MT1MQ8N339 61 aa6.38□□□□□ -1.39
LIMS2-215ENST00000484252 CRCT1Q9UGL9 99 aa6.38□□□□□ -1.39
LIMS2-215ENST00000484252 KRTAP4-3Q9BYR4 195 aa6.35□□□□□ -1.39
LIMS2-215ENST00000484252 LOC100996750A0A140TA64 210 aa6.32□□□□□ -1.4
LIMS2-215ENST00000484252 MUC12Q9UKN1 5478 aa6.3□□□□□ -1.4
LIMS2-215ENST00000484252 MACF1Q9UPN3 7388 aaKnown RBP6.18□□□□□ -1.42
LIMS2-215ENST00000484252 LCE5AQ5TCM9 118 aa6.18□□□□□ -1.42
LIMS2-215ENST00000484252 SPRR2FQ96RM1 72 aa6.13□□□□□ -1.43
LIMS2-215ENST00000484252 KRTAP9-6A0A140TA67 174 aa6.12□□□□□ -1.43
LIMS2-215ENST00000484252 SYNE2Q8WXH0 6885 aaKnown RBP6.02□□□□□ -1.45
LIMS2-215ENST00000484252 KRTAP12-4P60329 112 aa6□□□□□ -1.45
LIMS2-215ENST00000484252 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.9□□□□□ -1.47
LIMS2-215ENST00000484252 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.47
LIMS2-215ENST00000484252 LCE3BQ5TA77 95 aa5.84□□□□□ -1.47
LIMS2-215ENST00000484252 KRTAP5-9P26371 169 aa5.82□□□□□ -1.48
LIMS2-215ENST00000484252 MT1AP04731 61 aa5.81□□□□□ -1.48
LIMS2-215ENST00000484252 MDN1Q9NU22 5596 aa5.8□□□□□ -1.48
LIMS2-215ENST00000484252 LCE1AQ5T7P2 110 aa5.78□□□□□ -1.48
LIMS2-215ENST00000484252 KRTAP6-1Q3LI64 71 aa5.76□□□□□ -1.49
LIMS2-215ENST00000484252 KRTAP6-3Q3LI67 103 aa5.71□□□□□ -1.5
LIMS2-215ENST00000484252 KRTAP5-5Q701N2 237 aaPredicted RBP5.66□□□□□ -1.5
LIMS2-215ENST00000484252 KRTAP4-9Q9BYQ8 210 aa5.65□□□□□ -1.5
LIMS2-215ENST00000484252 SPRR2EP22531 72 aa5.63□□□□□ -1.51
LIMS2-215ENST00000484252 SPRR2BP35325 72 aa5.63□□□□□ -1.51
LIMS2-215ENST00000484252 SPRR2AP35326 72 aa5.63□□□□□ -1.51
LIMS2-215ENST00000484252 KRTAP9-7A8MTY7 169 aa5.6□□□□□ -1.51
LIMS2-215ENST00000484252 LCE3DQ9BYE3 92 aa5.58□□□□□ -1.52
LIMS2-215ENST00000484252 LCE3EQ5T5B0 92 aa5.52□□□□□ -1.53
LIMS2-215ENST00000484252 SYNE1Q8NF91 8797 aaKnown RBP5.45□□□□□ -1.54
LIMS2-215ENST00000484252 KRTAP9-4Q9BYQ2 154 aa5.43□□□□□ -1.54
LIMS2-215ENST00000484252 SPRR2DP22532 72 aa5.4□□□□□ -1.54
LIMS2-215ENST00000484252 NEBP20929 6669 aa5.36□□□□□ -1.55
LIMS2-215ENST00000484252 PRM1P04553 51 aa5.35□□□□□ -1.55
LIMS2-215ENST00000484252 MT3P25713 68 aa5.2□□□□□ -1.58
LIMS2-215ENST00000484252 KRTAP6-2Q3LI66 62 aa5.16□□□□□ -1.58
LIMS2-215ENST00000484252 KRTAP5-4Q6L8H1 288 aa5.01□□□□□ -1.61
LIMS2-215ENST00000484252 KRTAP20-1Q3LI63 56 aa4.95□□□□□ -1.62
LIMS2-215ENST00000484252 KRTAP2-2Q9BYT5 123 aa4.91□□□□□ -1.62
LIMS2-215ENST00000484252 KRTAP4-6Q9BYQ5 205 aa4.79□□□□□ -1.64
LIMS2-215ENST00000484252 OBSCNQ5VST9 7968 aa4.74□□□□□ -1.65
LIMS2-215ENST00000484252 MT4P47944 62 aa4.73□□□□□ -1.65
LIMS2-215ENST00000484252 LCE4AQ5TA78 99 aa4.73□□□□□ -1.65
LIMS2-215ENST00000484252 KRTAP20-2Q3LI61 65 aa4.69□□□□□ -1.66
LIMS2-215ENST00000484252 KRTAP5-2Q701N4 177 aa4.68□□□□□ -1.66
LIMS2-215ENST00000484252 LCE1DQ5T752 114 aa4.6□□□□□ -1.67
LIMS2-215ENST00000484252 HMCN1Q96RW7 5635 aa4.6□□□□□ -1.67
LIMS2-215ENST00000484252 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
LIMS2-215ENST00000484252 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
LIMS2-215ENST00000484252 MUC5ACP98088 5654 aa4.26□□□□□ -1.73
LIMS2-215ENST00000484252 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
LIMS2-215ENST00000484252 KRTAP5-10Q6L8G5 202 aa4.07□□□□□ -1.76
LIMS2-215ENST00000484252 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
LIMS2-215ENST00000484252 AHNAK2Q8IVF2 5795 aa4.05□□□□□ -1.76
LIMS2-215ENST00000484252 LCE1CQ5T751 118 aa4.02□□□□□ -1.77
LIMS2-215ENST00000484252 GPR98Q8WXG9 6306 aa4□□□□□ -1.77
LIMS2-215ENST00000484252 KRTAP4-2Q9BYR5 136 aa3.99□□□□□ -1.77
LIMS2-215ENST00000484252 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
LIMS2-215ENST00000484252 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
LIMS2-215ENST00000484252 KRTAP5-8O75690 187 aa3.79□□□□□ -1.8
LIMS2-215ENST00000484252 KRTAP21-2Q3LI59 83 aa3.74□□□□□ -1.81
LIMS2-215ENST00000484252 KRTAP5-7Q6L8G8 165 aa3.71□□□□□ -1.82
LIMS2-215ENST00000484252 KRTAP21-1Q3LI58 79 aa3.48□□□□□ -1.85
LIMS2-215ENST00000484252 KRTAP5-11Q6L8G4 156 aa3.46□□□□□ -1.86
LIMS2-215ENST00000484252 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
LIMS2-215ENST00000484252 MUC5BQ9HC84 5762 aaPredicted RBP3.36□□□□□ -1.87
LIMS2-215ENST00000484252 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
LIMS2-215ENST00000484252 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
LIMS2-215ENST00000484252 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
LIMS2-215ENST00000484252 AHNAKQ09666 5890 aaKnown RBP3.17□□□□□ -1.9
LIMS2-215ENST00000484252 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
LIMS2-215ENST00000484252 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
LIMS2-215ENST00000484252 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 99.1 ms