RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 DSTQ03001 7570 aaKnown RBP5.57□□□□□ -1.52
CCDC28B-205ENST00000483009 MT1MQ8N339 61 aa5.56□□□□□ -1.52
CCDC28B-205ENST00000483009 PSPHP1O15172 72 aa5.53□□□□□ -1.52
CCDC28B-205ENST00000483009 Q1T7F1 81 aa5.53□□□□□ -1.52
CCDC28B-205ENST00000483009 K7ERS5 55 aa5.5□□□□□ -1.53
CCDC28B-205ENST00000483009 KRTAP12-3P60328 96 aa5.46□□□□□ -1.54
CCDC28B-205ENST00000483009 KRTAP25-1Q3LHN0 102 aa5.46□□□□□ -1.54
CCDC28B-205ENST00000483009 KRTAP4-9Q9BYQ8 210 aa5.41□□□□□ -1.54
CCDC28B-205ENST00000483009 KRTAP4-3Q9BYR4 195 aa5.41□□□□□ -1.54
CCDC28B-205ENST00000483009 PCP4P48539 62 aa5.4□□□□□ -1.54
CCDC28B-205ENST00000483009 A6NED7 52 aa5.35□□□□□ -1.55
CCDC28B-205ENST00000483009 LCE4AQ5TA78 99 aa5.34□□□□□ -1.55
CCDC28B-205ENST00000483009 LCE1DQ5T752 114 aa5.31□□□□□ -1.56
CCDC28B-205ENST00000483009 KRTAP4-7Q9BYR0 210 aa5.31□□□□□ -1.56
CCDC28B-205ENST00000483009 RPS28P62857 69 aaKnown RBP5.29□□□□□ -1.56
CCDC28B-205ENST00000483009 MT4P47944 62 aa5.26□□□□□ -1.57
CCDC28B-205ENST00000483009 KRTAP23-1A1A580 65 aa5.25□□□□□ -1.57
CCDC28B-205ENST00000483009 KRTAP5-4Q6L8H1 288 aa5.25□□□□□ -1.57
CCDC28B-205ENST00000483009 GPR98Q8WXG9 6306 aa5.23□□□□□ -1.57
CCDC28B-205ENST00000483009 HMCN1Q96RW7 5635 aa5.22□□□□□ -1.57
CCDC28B-205ENST00000483009 CDC42SE1Q9NRR8 79 aa5.21□□□□□ -1.58
CCDC28B-205ENST00000483009 KRTAP19-4Q3LI73 84 aa5.17□□□□□ -1.58
CCDC28B-205ENST00000483009 ROMO1P60602 79 aa5.13□□□□□ -1.59
CCDC28B-205ENST00000483009 KRTAP15-1Q3LI76 137 aa5.13□□□□□ -1.59
CCDC28B-205ENST00000483009 KRTAP4-6Q9BYQ5 205 aa5.12□□□□□ -1.59
CCDC28B-205ENST00000483009 KRTAP5-5Q701N2 237 aaPredicted RBP5.08□□□□□ -1.6
CCDC28B-205ENST00000483009 AHNAK2Q8IVF2 5795 aa5.03□□□□□ -1.6
CCDC28B-205ENST00000483009 LOC100996750A0A140TA64 210 aa5.02□□□□□ -1.61
CCDC28B-205ENST00000483009 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
CCDC28B-205ENST00000483009 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
CCDC28B-205ENST00000483009 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
CCDC28B-205ENST00000483009 KRTAP12-4P60329 112 aa4.94□□□□□ -1.62
CCDC28B-205ENST00000483009 SYNE1Q8NF91 8797 aaKnown RBP4.91□□□□□ -1.62
CCDC28B-205ENST00000483009 KRTAP5-10Q6L8G5 202 aa4.89□□□□□ -1.63
CCDC28B-205ENST00000483009 H3BS24 57 aa4.85□□□□□ -1.63
CCDC28B-205ENST00000483009 KRTAP5-3Q6L8H2 238 aa4.81□□□□□ -1.64
CCDC28B-205ENST00000483009 MT1AP04731 61 aa4.78□□□□□ -1.64
CCDC28B-205ENST00000483009 KRTAP9-6A8MVA2 160 aa4.74□□□□□ -1.65
CCDC28B-205ENST00000483009 KRTAP6-1Q3LI64 71 aa4.73□□□□□ -1.65
CCDC28B-205ENST00000483009 KRTAP5-7Q6L8G8 165 aa4.7□□□□□ -1.66
CCDC28B-205ENST00000483009 BRK1Q8WUW1 75 aa4.65□□□□□ -1.67
CCDC28B-205ENST00000483009 A0A0A0MQY5 61 aa4.63□□□□□ -1.67
CCDC28B-205ENST00000483009 KRTAP5-2Q701N4 177 aa4.62□□□□□ -1.67
CCDC28B-205ENST00000483009 KRTAP9-4Q9BYQ2 154 aa4.59□□□□□ -1.67
CCDC28B-205ENST00000483009 KRTAP6-2Q3LI66 62 aa4.5□□□□□ -1.69
CCDC28B-205ENST00000483009 KRTAP4-11Q9BYQ6 195 aa4.5□□□□□ -1.69
CCDC28B-205ENST00000483009 PMAIP1Q13794 54 aa4.37□□□□□ -1.71
CCDC28B-205ENST00000483009 MT3P25713 68 aa4.36□□□□□ -1.71
CCDC28B-205ENST00000483009 KRTAP5-8O75690 187 aa4.34□□□□□ -1.71
CCDC28B-205ENST00000483009 PRO0628Q9UI54 55 aa4.3□□□□□ -1.72
CCDC28B-205ENST00000483009 OBSCNQ5VST9 7968 aa4.23□□□□□ -1.73
CCDC28B-205ENST00000483009 PRAC1Q96KF2 57 aa4.22□□□□□ -1.73
CCDC28B-205ENST00000483009 MUC5BQ9HC84 5762 aaPredicted RBP4.14□□□□□ -1.75
CCDC28B-205ENST00000483009 AHNAKQ09666 5890 aaKnown RBP4.13□□□□□ -1.75
CCDC28B-205ENST00000483009 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
CCDC28B-205ENST00000483009 KRTAP9-9Q9BYP9 154 aa4.11□□□□□ -1.75
CCDC28B-205ENST00000483009 MUC5ACP98088 5654 aa4.09□□□□□ -1.76
CCDC28B-205ENST00000483009 KTN1-AS1Q86SY8 53 aa3.99□□□□□ -1.77
CCDC28B-205ENST00000483009 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
CCDC28B-205ENST00000483009 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
CCDC28B-205ENST00000483009 LCE1BQ5T7P3 118 aa3.74□□□□□ -1.81
CCDC28B-205ENST00000483009 LCE1CQ5T751 118 aa3.69□□□□□ -1.82
CCDC28B-205ENST00000483009 LCE3DQ9BYE3 92 aa3.64□□□□□ -1.83
CCDC28B-205ENST00000483009 LUZP6Q538Z0 58 aa3.56□□□□□ -1.84
CCDC28B-205ENST00000483009 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
CCDC28B-205ENST00000483009 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.38□□□□□ -1.87
CCDC28B-205ENST00000483009 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
CCDC28B-205ENST00000483009 KRTAP5-11Q6L8G4 156 aa3.35□□□□□ -1.87
CCDC28B-205ENST00000483009 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
CCDC28B-205ENST00000483009 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
CCDC28B-205ENST00000483009 KRTAP21-2Q3LI59 83 aa3.11□□□□□ -1.91
CCDC28B-205ENST00000483009 PHGR1C9JFL3 82 aa2.88□□□□□ -1.95
CCDC28B-205ENST00000483009 KRTAP4-4Q9BYR3 166 aa2.83□□□□□ -1.96
CCDC28B-205ENST00000483009 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
CCDC28B-205ENST00000483009 PRM1P04553 51 aa2.62□□□□□ -1.99
CCDC28B-205ENST00000483009 INE1O15225 51 aa2.53□□□□□ -2
CCDC28B-205ENST00000483009 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
CCDC28B-205ENST00000483009 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 538.7 ms