RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 FCGBPQ9Y6R7 5405 aaPredicted RBP4.27□□□□□ -1.73
RTFDC1-207ENST00000477573 KRTAP19-4Q3LI73 84 aa4.26□□□□□ -1.73
RTFDC1-207ENST00000477573 KRTAP9-2Q9BYQ4 174 aa4.26□□□□□ -1.73
RTFDC1-207ENST00000477573 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
RTFDC1-207ENST00000477573 MT1EP04732 61 aa4.22□□□□□ -1.73
RTFDC1-207ENST00000477573 MT1LQ93083 61 aa4.16□□□□□ -1.74
RTFDC1-207ENST00000477573 KRTAP6-3Q3LI67 103 aa4.14□□□□□ -1.75
RTFDC1-207ENST00000477573 CRCT1Q9UGL9 99 aa4.11□□□□□ -1.75
RTFDC1-207ENST00000477573 MACF1Q9UPN3 7388 aaKnown RBP4.06□□□□□ -1.76
RTFDC1-207ENST00000477573 LCE1AQ5T7P2 110 aa4.04□□□□□ -1.76
RTFDC1-207ENST00000477573 KRTAP19-3Q7Z4W3 81 aa4.03□□□□□ -1.76
RTFDC1-207ENST00000477573 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
RTFDC1-207ENST00000477573 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
RTFDC1-207ENST00000477573 MT1GP13640 62 aa4.03□□□□□ -1.76
RTFDC1-207ENST00000477573 MUC12Q9UKN1 5478 aa4.01□□□□□ -1.77
RTFDC1-207ENST00000477573 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
RTFDC1-207ENST00000477573 MT1MQ8N339 61 aa3.96□□□□□ -1.78
RTFDC1-207ENST00000477573 LCE5AQ5TCM9 118 aa3.93□□□□□ -1.78
RTFDC1-207ENST00000477573 KRTAP5-9P26371 169 aa3.9□□□□□ -1.78
RTFDC1-207ENST00000477573 SYNE2Q8WXH0 6885 aaKnown RBP3.9□□□□□ -1.78
RTFDC1-207ENST00000477573 KRTAP4-3Q9BYR4 195 aa3.87□□□□□ -1.79
RTFDC1-207ENST00000477573 PRM1P04553 51 aa3.85□□□□□ -1.79
RTFDC1-207ENST00000477573 MDN1Q9NU22 5596 aa3.82□□□□□ -1.8
RTFDC1-207ENST00000477573 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
RTFDC1-207ENST00000477573 LOC100996750A0A140TA64 210 aa3.78□□□□□ -1.8
RTFDC1-207ENST00000477573 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.78□□□□□ -1.81
RTFDC1-207ENST00000477573 SPRR2EP22531 72 aa3.78□□□□□ -1.81
RTFDC1-207ENST00000477573 SPRR2BP35325 72 aa3.78□□□□□ -1.81
RTFDC1-207ENST00000477573 SPRR2AP35326 72 aa3.78□□□□□ -1.81
RTFDC1-207ENST00000477573 MT1AP04731 61 aa3.75□□□□□ -1.81
RTFDC1-207ENST00000477573 DSTQ03001 7570 aaKnown RBP3.73□□□□□ -1.81
RTFDC1-207ENST00000477573 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
RTFDC1-207ENST00000477573 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
RTFDC1-207ENST00000477573 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
RTFDC1-207ENST00000477573 LCE1DQ5T752 114 aa3.66□□□□□ -1.82
RTFDC1-207ENST00000477573 SPRR2DP22532 72 aa3.63□□□□□ -1.83
RTFDC1-207ENST00000477573 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
RTFDC1-207ENST00000477573 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.83
RTFDC1-207ENST00000477573 SYNE1Q8NF91 8797 aaKnown RBP3.54□□□□□ -1.84
RTFDC1-207ENST00000477573 KRTAP6-1Q3LI64 71 aa3.5□□□□□ -1.85
RTFDC1-207ENST00000477573 KRTAP4-9Q9BYQ8 210 aa3.5□□□□□ -1.85
RTFDC1-207ENST00000477573 NEBP20929 6669 aa3.49□□□□□ -1.85
RTFDC1-207ENST00000477573 LCE3BQ5TA77 95 aa3.49□□□□□ -1.85
RTFDC1-207ENST00000477573 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
RTFDC1-207ENST00000477573 KRTAP20-1Q3LI63 56 aa3.44□□□□□ -1.86
RTFDC1-207ENST00000477573 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
RTFDC1-207ENST00000477573 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
RTFDC1-207ENST00000477573 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
RTFDC1-207ENST00000477573 LCE4AQ5TA78 99 aa3.23□□□□□ -1.89
RTFDC1-207ENST00000477573 MT3P25713 68 aa3.22□□□□□ -1.89
RTFDC1-207ENST00000477573 MT4P47944 62 aa3.15□□□□□ -1.91
RTFDC1-207ENST00000477573 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.91
RTFDC1-207ENST00000477573 HMCN1Q96RW7 5635 aa3.06□□□□□ -1.92
RTFDC1-207ENST00000477573 KRTAP4-12Q9BQ66 201 aa3.04□□□□□ -1.92
RTFDC1-207ENST00000477573 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
RTFDC1-207ENST00000477573 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
RTFDC1-207ENST00000477573 KRTAP9-9Q9BYP9 154 aa2.98□□□□□ -1.93
RTFDC1-207ENST00000477573 KRTAP5-3Q6L8H2 238 aa2.95□□□□□ -1.94
RTFDC1-207ENST00000477573 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
RTFDC1-207ENST00000477573 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.95
RTFDC1-207ENST00000477573 KRTAP5-7Q6L8G8 165 aa2.88□□□□□ -1.95
RTFDC1-207ENST00000477573 AHNAK2Q8IVF2 5795 aa2.85□□□□□ -1.95
RTFDC1-207ENST00000477573 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.95
RTFDC1-207ENST00000477573 KRTAP4-11Q9BYQ6 195 aa2.77□□□□□ -1.97
RTFDC1-207ENST00000477573 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
RTFDC1-207ENST00000477573 MUC5ACP98088 5654 aa2.63□□□□□ -1.99
RTFDC1-207ENST00000477573 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
RTFDC1-207ENST00000477573 LCE1BQ5T7P3 118 aa2.59□□□□□ -2
RTFDC1-207ENST00000477573 KRTAP5-1Q6L8H4 278 aa2.58□□□□□ -2
RTFDC1-207ENST00000477573 LCE1CQ5T751 118 aa2.56□□□□□ -2
RTFDC1-207ENST00000477573 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
RTFDC1-207ENST00000477573 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.4□□□□□ -2.02
RTFDC1-207ENST00000477573 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
RTFDC1-207ENST00000477573 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.04
RTFDC1-207ENST00000477573 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
RTFDC1-207ENST00000477573 KRTAP4-4Q9BYR3 166 aa2.02□□□□□ -2.09
RTFDC1-207ENST00000477573 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
RTFDC1-207ENST00000477573 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 95.7 ms