RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 CRIPTQ9P021 101 aa1.56□□□□□ -2.16
UBR3-209ENST00000477461 MT1FP04733 61 aa1.55□□□□□ -2.16
UBR3-209ENST00000477461 RPS28P62857 69 aaKnown RBP1.55□□□□□ -2.16
UBR3-209ENST00000477461 A0A1B0GU33 70 aa1.54□□□□□ -2.16
UBR3-209ENST00000477461 M0QZ58 72 aa1.54□□□□□ -2.16
UBR3-209ENST00000477461 LINC01558Q9Y6Z2 57 aa1.54□□□□□ -2.16
UBR3-209ENST00000477461 RNF213Q63HN8 5207 aa1.54□□□□□ -2.16
UBR3-209ENST00000477461 FLGP20930 4061 aaPredicted RBP1.52□□□□□ -2.17
UBR3-209ENST00000477461 Q1T7F1 81 aa1.52□□□□□ -2.17
UBR3-209ENST00000477461 LINC01554Q52M75 96 aa1.52□□□□□ -2.17
UBR3-209ENST00000477461 MUC2Q02817 5179 aa1.51□□□□□ -2.17
UBR3-209ENST00000477461 UQCR11O14957 56 aa1.5□□□□□ -2.17
UBR3-209ENST00000477461 Q5VV11 94 aa1.5□□□□□ -2.17
UBR3-209ENST00000477461 SPRR2GQ9BYE4 73 aa1.5□□□□□ -2.17
UBR3-209ENST00000477461 FAT4Q6V0I7 4981 aa1.49□□□□□ -2.17
UBR3-209ENST00000477461 A0A0D9SG42 100 aa1.49□□□□□ -2.17
UBR3-209ENST00000477461 KRTAP13-4Q3LI77 160 aa1.49□□□□□ -2.17
UBR3-209ENST00000477461 SPATA8Q6RVD6 105 aa1.49□□□□□ -2.17
UBR3-209ENST00000477461 PLAC4Q8WY50 150 aa1.49□□□□□ -2.17
UBR3-209ENST00000477461 KRTAP19-8Q3LI54 63 aa1.48□□□□□ -2.17
UBR3-209ENST00000477461 MIR22HGQ0VDD5 57 aa1.47□□□□□ -2.17
UBR3-209ENST00000477461 A6NN06 94 aa1.46□□□□□ -2.18
UBR3-209ENST00000477461 MT1BP07438 61 aa1.45□□□□□ -2.18
UBR3-209ENST00000477461 PRO2289Q9P1D8 64 aa1.44□□□□□ -2.18
UBR3-209ENST00000477461 KRTAP12-1P59990 96 aa1.43□□□□□ -2.18
UBR3-209ENST00000477461 KRTAP19-6Q3LI70 58 aa1.42□□□□□ -2.18
UBR3-209ENST00000477461 CDC42SE1Q9NRR8 79 aa1.42□□□□□ -2.18
UBR3-209ENST00000477461 BRK1Q8WUW1 75 aa1.41□□□□□ -2.18
UBR3-209ENST00000477461 MT1XP80297 61 aa1.39□□□□□ -2.19
UBR3-209ENST00000477461 TNP1P09430 55 aa1.36□□□□□ -2.19
UBR3-209ENST00000477461 ROMO1P60602 79 aa1.35□□□□□ -2.19
UBR3-209ENST00000477461 PMAIP1Q13794 54 aa1.35□□□□□ -2.19
UBR3-209ENST00000477461 C10orf95Q9H7T3 257 aa1.35□□□□□ -2.19
UBR3-209ENST00000477461 KRTAP8-1Q8IUC2 63 aa1.32□□□□□ -2.2
UBR3-209ENST00000477461 USH2AO75445 5202 aa1.31□□□□□ -2.2
UBR3-209ENST00000477461 SPRR2FQ96RM1 72 aa1.28□□□□□ -2.2
UBR3-209ENST00000477461 SSPOA2VEC9 5147 aa1.28□□□□□ -2.2
UBR3-209ENST00000477461 KRTAP19-5Q3LI72 72 aa1.25□□□□□ -2.21
UBR3-209ENST00000477461 KTN1-AS1Q86SY8 53 aa1.25□□□□□ -2.21
UBR3-209ENST00000477461 FSIP2Q5CZC0 6907 aa1.24□□□□□ -2.21
UBR3-209ENST00000477461 MT1EP04732 61 aa1.23□□□□□ -2.21
UBR3-209ENST00000477461 SPRR2EP22531 72 aa1.23□□□□□ -2.21
UBR3-209ENST00000477461 SPRR2BP35325 72 aa1.23□□□□□ -2.21
UBR3-209ENST00000477461 SPRR2AP35326 72 aa1.23□□□□□ -2.21
UBR3-209ENST00000477461 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
UBR3-209ENST00000477461 KRTAP19-3Q7Z4W3 81 aa1.21□□□□□ -2.22
UBR3-209ENST00000477461 MT1LQ93083 61 aa1.2□□□□□ -2.22
UBR3-209ENST00000477461 MT1GP13640 62 aa1.19□□□□□ -2.22
UBR3-209ENST00000477461 SPRR2DP22532 72 aa1.19□□□□□ -2.22
UBR3-209ENST00000477461 MT1MQ8N339 61 aa1.17□□□□□ -2.22
UBR3-209ENST00000477461 KRTAP2-3P0C7H8 128 aa1.15□□□□□ -2.23
UBR3-209ENST00000477461 KRTAP20-1Q3LI63 56 aa1.15□□□□□ -2.23
UBR3-209ENST00000477461 KRTAP2-4Q9BYR9 128 aa1.15□□□□□ -2.23
UBR3-209ENST00000477461 KMT2DO14686 5537 aa1.12□□□□□ -2.23
UBR3-209ENST00000477461 KRTAP2-1Q9BYU5 128 aa1.11□□□□□ -2.23
UBR3-209ENST00000477461 MACF1Q9UPN3 7388 aaKnown RBP1.09□□□□□ -2.24
UBR3-209ENST00000477461 SYNE2Q8WXH0 6885 aaKnown RBP1.07□□□□□ -2.24
UBR3-209ENST00000477461 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
UBR3-209ENST00000477461 MUC12Q9UKN1 5478 aa1.05□□□□□ -2.24
UBR3-209ENST00000477461 KRTAP5-10Q6L8G5 202 aa1.04□□□□□ -2.24
UBR3-209ENST00000477461 MT1AP04731 61 aa1.03□□□□□ -2.24
UBR3-209ENST00000477461 MT4P47944 62 aa1.03□□□□□ -2.24
UBR3-209ENST00000477461 KRTAP6-1Q3LI64 71 aa1.01□□□□□ -2.25
UBR3-209ENST00000477461 NEBP20929 6669 aa1□□□□□ -2.25
UBR3-209ENST00000477461 MDN1Q9NU22 5596 aa0.99□□□□□ -2.25
UBR3-209ENST00000477461 KRTAP20-2Q3LI61 65 aa0.97□□□□□ -2.25
UBR3-209ENST00000477461 KRTAP6-2Q3LI66 62 aa0.94□□□□□ -2.26
UBR3-209ENST00000477461 INE1O15225 51 aa0.92□□□□□ -2.26
UBR3-209ENST00000477461 DSTQ03001 7570 aaKnown RBP0.91□□□□□ -2.26
UBR3-209ENST00000477461 SYNE1Q8NF91 8797 aaKnown RBP0.87□□□□□ -2.27
UBR3-209ENST00000477461 AHNAK2Q8IVF2 5795 aa0.78□□□□□ -2.29
UBR3-209ENST00000477461 AHNAKQ09666 5890 aaKnown RBP0.7□□□□□ -2.3
UBR3-209ENST00000477461 PRM1P04553 51 aa0.69□□□□□ -2.3
UBR3-209ENST00000477461 GPR98Q8WXG9 6306 aa0.68□□□□□ -2.3
UBR3-209ENST00000477461 MUC5BQ9HC84 5762 aaPredicted RBP0.66□□□□□ -2.3
UBR3-209ENST00000477461 MUC5ACP98088 5654 aa0.64□□□□□ -2.31
UBR3-209ENST00000477461 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
UBR3-209ENST00000477461 KRTAP21-1Q3LI58 79 aa0.42□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 71.2 ms