RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 AEBP2Q6ZN18 517 aaPredicted RBP27.55■■■□□ 2
UBR3-209ENST00000477461 CHIC1Q5VXU3 224 aa26.38■■□□□ 1.81
UBR3-209ENST00000477461 SENP3Q9H4L4 574 aaPredicted RBP23.37■■□□□ 1.33
UBR3-209ENST00000477461 PHF23Q9BUL5 403 aaPredicted RBP23.22■■□□□ 1.31
UBR3-209ENST00000477461 FOXD1Q16676 465 aa21.82■■□□□ 1.08
UBR3-209ENST00000477461 PLPPR3Q6T4P5 718 aa21.2■□□□□ 0.98
UBR3-209ENST00000477461 PPP6R1Q9UPN7 881 aa20.68■□□□□ 0.9
UBR3-209ENST00000477461 ADRA2BP18089 450 aa20.66■□□□□ 0.9
UBR3-209ENST00000477461 PIAS4Q8N2W9 510 aaPredicted RBP20.47■□□□□ 0.87
UBR3-209ENST00000477461 MSH5O43196 834 aa20.22■□□□□ 0.83
UBR3-209ENST00000477461 POTEDQ86YR6 584 aa19.33■□□□□ 0.68
UBR3-209ENST00000477461 MAPK8IP2Q13387 824 aaPredicted RBP18.91■□□□□ 0.62
UBR3-209ENST00000477461 SCAF1Q9H7N4 1312 aaKnown RBP18.76■□□□□ 0.59
UBR3-209ENST00000477461 PPP4R3CPQ6ZMV5 832 aa18.67■□□□□ 0.58
UBR3-209ENST00000477461 DMRT2Q9Y5R5 561 aa18.58■□□□□ 0.56
UBR3-209ENST00000477461 CNKSR2Q8WXI2 1034 aa18.2■□□□□ 0.5
UBR3-209ENST00000477461 NCBP3Q53F19 620 aaKnown RBP18■□□□□ 0.47
UBR3-209ENST00000477461 HOXD11P31277 338 aaPredicted RBP17.99■□□□□ 0.47
UBR3-209ENST00000477461 DCAF8L1A6NGE4 600 aa17.98■□□□□ 0.47
UBR3-209ENST00000477461 RNF216Q9NWF9 866 aaPredicted RBP17.94■□□□□ 0.46
UBR3-209ENST00000477461 NPM3O75607 178 aaKnown RBP17.78■□□□□ 0.44
UBR3-209ENST00000477461 KCNA4P22459 653 aa17.74■□□□□ 0.43
UBR3-209ENST00000477461 RNF39Q9H2S5 420 aa17.31■□□□□ 0.36
UBR3-209ENST00000477461 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
UBR3-209ENST00000477461 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.26■□□□□ 0.359e-6■□□□□ 10.7
UBR3-209ENST00000477461 DNAJC5BQ9UF47 199 aa17.19■□□□□ 0.34
UBR3-209ENST00000477461 C1QBPQ07021 282 aaKnown RBP17.05■□□□□ 0.32
UBR3-209ENST00000477461 SLC4A2P04920 1241 aa16.91■□□□□ 0.3
UBR3-209ENST00000477461 U3KPZ7 1027 aaPredicted RBP16.88■□□□□ 0.29
UBR3-209ENST00000477461 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
UBR3-209ENST00000477461 SPINK5Q9NQ38 1064 aaPredicted RBP16.62■□□□□ 0.25
UBR3-209ENST00000477461 CAPN15O75808 1086 aa16.58■□□□□ 0.24
UBR3-209ENST00000477461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.42■□□□□ 0.22
UBR3-209ENST00000477461 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
UBR3-209ENST00000477461 TRHP20396 242 aaPredicted RBP16.4■□□□□ 0.22
UBR3-209ENST00000477461 FOXD4L1Q9NU39 408 aa16.39■□□□□ 0.21
UBR3-209ENST00000477461 MYCNP04198 464 aaPredicted RBP16.38■□□□□ 0.21
UBR3-209ENST00000477461 SAMD1Q6SPF0 538 aaPredicted RBP16.37■□□□□ 0.21
UBR3-209ENST00000477461 DSG3P32926 999 aa16.34■□□□□ 0.21
UBR3-209ENST00000477461 APLP2Q06481 763 aa16.34■□□□□ 0.21
UBR3-209ENST00000477461 ZBTB22O15209 634 aa16.31■□□□□ 0.2
UBR3-209ENST00000477461 ABCB7O75027 752 aa16.25■□□□□ 0.19
UBR3-209ENST00000477461 ZNF219Q9P2Y4 722 aaPredicted RBP16.24■□□□□ 0.19
UBR3-209ENST00000477461 ATF5Q9Y2D1 282 aaPredicted RBP16.09■□□□□ 0.17
UBR3-209ENST00000477461 POLA2Q14181 598 aa15.99■□□□□ 0.15
UBR3-209ENST00000477461 EHMT2Q96KQ7 1210 aa15.86■□□□□ 0.13
UBR3-209ENST00000477461 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
UBR3-209ENST00000477461 ATXN8OSP0DMR3 200 aa15.79■□□□□ 0.12
UBR3-209ENST00000477461 ZBTB12Q9Y330 459 aaPredicted RBP15.55■□□□□ 0.08
UBR3-209ENST00000477461 RBM42Q9BTD8 480 aaKnown RBP15.51■□□□□ 0.07
UBR3-209ENST00000477461 OSCARQ8IYS5 282 aa15.45■□□□□ 0.06
UBR3-209ENST00000477461 FBLN2P98095 1184 aa15.37■□□□□ 0.05
UBR3-209ENST00000477461 MKRN4PQ13434 485 aaPredicted RBP15.33■□□□□ 0.04
UBR3-209ENST00000477461 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
UBR3-209ENST00000477461 POTEHQ6S545 545 aa15.2■□□□□ 0.02
UBR3-209ENST00000477461 REM2Q8IYK8 340 aaPredicted RBP15.16■□□□□ 0.02
UBR3-209ENST00000477461 SPDYE2BA6NHP3 402 aa15.14■□□□□ 0.01
UBR3-209ENST00000477461 SPDYE6P0CI01 402 aa15.14■□□□□ 0.01
UBR3-209ENST00000477461 SPDYE2Q495Y8 402 aa15.14■□□□□ 0.01
UBR3-209ENST00000477461 CHRDL2Q6WN34 429 aa15.13■□□□□ 0.01
UBR3-209ENST00000477461 ZNF692Q9BU19 519 aaPredicted RBP15.1■□□□□ 0.01
UBR3-209ENST00000477461 PITPNM1O00562 1244 aa14.99□□□□□ -0.01
UBR3-209ENST00000477461 SSUH2Q9Y2M2 353 aa14.95□□□□□ -0.02
UBR3-209ENST00000477461 CLEC11AQ9Y240 323 aa14.9□□□□□ -0.02
UBR3-209ENST00000477461 PABPN1Q86U42 306 aaKnown RBP eCLIP14.88□□□□□ -0.03
UBR3-209ENST00000477461 PIP4P2Q8N4L2 257 aa14.85□□□□□ -0.03
UBR3-209ENST00000477461 SPDYE1Q8NFV5 336 aaPredicted RBP14.82□□□□□ -0.04
UBR3-209ENST00000477461 FXR2P51116 673 aaKnown RBP eCLIP14.77□□□□□ -0.05
UBR3-209ENST00000477461 SPDYE4A6NLX3 237 aa14.76□□□□□ -0.05
UBR3-209ENST00000477461 PRR29P0C7W0 189 aa14.65□□□□□ -0.06
UBR3-209ENST00000477461 PRKAR2AP13861 404 aaKnown RBP14.64□□□□□ -0.07
UBR3-209ENST00000477461 CHADLQ6NUI6 762 aa14.6□□□□□ -0.07
UBR3-209ENST00000477461 HAX1O00165 279 aa14.56□□□□□ -0.08
UBR3-209ENST00000477461 STAG3Q9UJ98 1225 aa14.44□□□□□ -0.1
UBR3-209ENST00000477461 EVX2Q03828 476 aa14.41□□□□□ -0.1
UBR3-209ENST00000477461 FKBP8Q14318 412 aa14.37□□□□□ -0.11
UBR3-209ENST00000477461 SP7Q8TDD2 431 aaPredicted RBP14.37□□□□□ -0.11
UBR3-209ENST00000477461 PROM2Q8N271 834 aa14.32□□□□□ -0.12
UBR3-209ENST00000477461 CREBZFQ9NS37 354 aa14.32□□□□□ -0.12
UBR3-209ENST00000477461 FARP1Q9Y4F1 1045 aaPredicted RBP14.32□□□□□ -0.12
UBR3-209ENST00000477461 C19orf67A6NJJ6 358 aa14.28□□□□□ -0.12
UBR3-209ENST00000477461 CD44P16070 742 aaKnown RBP14.18□□□□□ -0.14
UBR3-209ENST00000477461 MIER1Q8N108 512 aa14.1□□□□□ -0.15
UBR3-209ENST00000477461 MNX1P50219 401 aaPredicted RBP14.08□□□□□ -0.16
UBR3-209ENST00000477461 GABBR2O75899 941 aa14.06□□□□□ -0.16
UBR3-209ENST00000477461 ZRANB1Q9UGI0 708 aa14.05□□□□□ -0.16
UBR3-209ENST00000477461 NPM1P06748 294 aaKnown RBP eCLIP14.04□□□□□ -0.16
UBR3-209ENST00000477461 PLCD3Q8N3E9 789 aa14.01□□□□□ -0.17
UBR3-209ENST00000477461 PLEKHG5O94827 1062 aa13.98□□□□□ -0.17
UBR3-209ENST00000477461 PAK3O75914 559 aaPredicted RBP13.93□□□□□ -0.18
UBR3-209ENST00000477461 TSPYL2Q9H2G4 693 aaPredicted RBP13.92□□□□□ -0.18
UBR3-209ENST00000477461 ZNF579Q8NAF0 562 aaKnown RBP13.9□□□□□ -0.18
UBR3-209ENST00000477461 PHF12Q96QT6 1004 aa13.89□□□□□ -0.19
UBR3-209ENST00000477461 FBXO3Q9UK99 471 aa13.88□□□□□ -0.19
UBR3-209ENST00000477461 RASEFQ8IZ41 740 aa13.81□□□□□ -0.2
UBR3-209ENST00000477461 GALR2O43603 387 aaPredicted RBP13.8□□□□□ -0.2
UBR3-209ENST00000477461 CLCN6P51797 869 aa13.77□□□□□ -0.21
UBR3-209ENST00000477461 POTEIP0CG38 1075 aa13.76□□□□□ -0.21
UBR3-209ENST00000477461 ZBTB47Q9UFB7 747 aaPredicted RBP13.76□□□□□ -0.21
UBR3-209ENST00000477461 DCBLD2Q96PD2 775 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms