RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 KRTAP4-9Q9BYQ8 210 aa7.4□□□□□ -1.22
LIME1-204ENST00000476183 KRTAP4-3Q9BYR4 195 aa7.36□□□□□ -1.23
LIME1-204ENST00000476183 KRTAP12-3P60328 96 aa7.32□□□□□ -1.24
LIME1-204ENST00000476183 PSPHP1O15172 72 aa7.31□□□□□ -1.24
LIME1-204ENST00000476183 Q1T7F1 81 aa7.28□□□□□ -1.24
LIME1-204ENST00000476183 V9GYY9 64 aa7.28□□□□□ -1.24
LIME1-204ENST00000476183 KRTAP25-1Q3LHN0 102 aa7.23□□□□□ -1.25
LIME1-204ENST00000476183 LCE1DQ5T752 114 aa7.22□□□□□ -1.25
LIME1-204ENST00000476183 KRTAP4-7Q9BYR0 210 aa7.22□□□□□ -1.25
LIME1-204ENST00000476183 K7ERS5 55 aa7.2□□□□□ -1.26
LIME1-204ENST00000476183 LCE4AQ5TA78 99 aa7.2□□□□□ -1.26
LIME1-204ENST00000476183 GPR98Q8WXG9 6306 aa7.18□□□□□ -1.26
LIME1-204ENST00000476183 HMCN1Q96RW7 5635 aa7.15□□□□□ -1.26
LIME1-204ENST00000476183 MT4P47944 62 aa7.14□□□□□ -1.27
LIME1-204ENST00000476183 KRTAP5-4Q6L8H1 288 aa7.12□□□□□ -1.27
LIME1-204ENST00000476183 A6NED7 52 aa7.03□□□□□ -1.28
LIME1-204ENST00000476183 KRTAP4-6Q9BYQ5 205 aa6.98□□□□□ -1.29
LIME1-204ENST00000476183 KRTAP23-1A1A580 65 aa6.95□□□□□ -1.3
LIME1-204ENST00000476183 RPS28P62857 69 aaKnown RBP6.91□□□□□ -1.3
LIME1-204ENST00000476183 KRTAP5-5Q701N2 237 aaPredicted RBP6.89□□□□□ -1.31
LIME1-204ENST00000476183 AHNAK2Q8IVF2 5795 aa6.87□□□□□ -1.31
LIME1-204ENST00000476183 CDC42SE1Q9NRR8 79 aa6.86□□□□□ -1.31
LIME1-204ENST00000476183 PCP4P48539 62 aa6.85□□□□□ -1.31
LIME1-204ENST00000476183 KRTAP15-1Q3LI76 137 aa6.85□□□□□ -1.31
LIME1-204ENST00000476183 KRTAP19-4Q3LI73 84 aa6.84□□□□□ -1.31
LIME1-204ENST00000476183 LOC100996750A0A140TA64 210 aa6.83□□□□□ -1.32
LIME1-204ENST00000476183 ROMO1P60602 79 aa6.77□□□□□ -1.33
LIME1-204ENST00000476183 LCE3CQ5T5A8 94 aa6.74□□□□□ -1.33
LIME1-204ENST00000476183 KRTAP20-2Q3LI61 65 aa6.71□□□□□ -1.34
LIME1-204ENST00000476183 KRTAP5-10Q6L8G5 202 aa6.69□□□□□ -1.34
LIME1-204ENST00000476183 SYNE1Q8NF91 8797 aaKnown RBP6.69□□□□□ -1.34
LIME1-204ENST00000476183 SPRR5A0A1B0GTR4 108 aa6.66□□□□□ -1.34
LIME1-204ENST00000476183 KRTAP12-4P60329 112 aa6.64□□□□□ -1.35
LIME1-204ENST00000476183 KRTAP5-3Q6L8H2 238 aa6.54□□□□□ -1.36
LIME1-204ENST00000476183 KRTAP9-6A8MVA2 160 aa6.42□□□□□ -1.38
LIME1-204ENST00000476183 MT1AP04731 61 aa6.41□□□□□ -1.38
LIME1-204ENST00000476183 KRTAP6-1Q3LI64 71 aa6.4□□□□□ -1.38
LIME1-204ENST00000476183 KRTAP5-7Q6L8G8 165 aa6.4□□□□□ -1.38
LIME1-204ENST00000476183 KRTAP5-2Q701N4 177 aa6.26□□□□□ -1.41
LIME1-204ENST00000476183 KRTAP9-4Q9BYQ2 154 aa6.19□□□□□ -1.42
LIME1-204ENST00000476183 KRTAP4-11Q9BYQ6 195 aa6.11□□□□□ -1.43
LIME1-204ENST00000476183 KRTAP6-2Q3LI66 62 aa6.09□□□□□ -1.43
LIME1-204ENST00000476183 BRK1Q8WUW1 75 aa6.06□□□□□ -1.44
LIME1-204ENST00000476183 KRTAP5-8O75690 187 aa5.91□□□□□ -1.46
LIME1-204ENST00000476183 OBSCNQ5VST9 7968 aa5.84□□□□□ -1.47
LIME1-204ENST00000476183 MT3P25713 68 aa5.84□□□□□ -1.47
LIME1-204ENST00000476183 PMAIP1Q13794 54 aa5.68□□□□□ -1.5
LIME1-204ENST00000476183 MUC5BQ9HC84 5762 aaPredicted RBP5.66□□□□□ -1.5
LIME1-204ENST00000476183 AHNAKQ09666 5890 aaKnown RBP5.61□□□□□ -1.51
LIME1-204ENST00000476183 KRTAP5-1Q6L8H4 278 aa5.6□□□□□ -1.51
LIME1-204ENST00000476183 MUC5ACP98088 5654 aa5.59□□□□□ -1.51
LIME1-204ENST00000476183 KRTAP9-9Q9BYP9 154 aa5.56□□□□□ -1.52
LIME1-204ENST00000476183 PRAC1Q96KF2 57 aa5.55□□□□□ -1.52
LIME1-204ENST00000476183 LCE1EQ5T753 118 aa5.35□□□□□ -1.55
LIME1-204ENST00000476183 PRO0628Q9UI54 55 aa5.33□□□□□ -1.56
LIME1-204ENST00000476183 KTN1-AS1Q86SY8 53 aa5.09□□□□□ -1.59
LIME1-204ENST00000476183 KRTAP4-2Q9BYR5 136 aa5.09□□□□□ -1.59
LIME1-204ENST00000476183 LCE1BQ5T7P3 118 aa5.05□□□□□ -1.6
LIME1-204ENST00000476183 LCE1CQ5T751 118 aa4.97□□□□□ -1.61
LIME1-204ENST00000476183 SVIPQ8NHG7 77 aa4.91□□□□□ -1.62
LIME1-204ENST00000476183 LCE3DQ9BYE3 92 aa4.86□□□□□ -1.63
LIME1-204ENST00000476183 LUZP6Q538Z0 58 aa4.67□□□□□ -1.66
LIME1-204ENST00000476183 KRTAP4-12Q9BQ66 201 aa4.59□□□□□ -1.67
LIME1-204ENST00000476183 LCE3EQ5T5B0 92 aa4.57□□□□□ -1.68
LIME1-204ENST00000476183 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.54□□□□□ -1.68
LIME1-204ENST00000476183 KRTAP5-11Q6L8G4 156 aa4.5□□□□□ -1.69
LIME1-204ENST00000476183 LCE1FQ5T754 118 aa4.34□□□□□ -1.71
LIME1-204ENST00000476183 KRTAP21-2Q3LI59 83 aa4.22□□□□□ -1.73
LIME1-204ENST00000476183 PHGR1C9JFL3 82 aa3.89□□□□□ -1.79
LIME1-204ENST00000476183 KRTAP4-4Q9BYR3 166 aa3.86□□□□□ -1.79
LIME1-204ENST00000476183 NDUFAF8A1L188 74 aa3.74□□□□□ -1.81
LIME1-204ENST00000476183 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
LIME1-204ENST00000476183 PRM1P04553 51 aa3.49□□□□□ -1.85
LIME1-204ENST00000476183 INE1O15225 51 aa3.09□□□□□ -1.91
LIME1-204ENST00000476183 A0A0A0MQY5 61 aa3.08□□□□□ -1.92
LIME1-204ENST00000476183 KRTAP21-1Q3LI58 79 aa2.92□□□□□ -1.94
LIME1-204ENST00000476183 H3BS24 57 aa2.64□□□□□ -1.99
LIME1-204ENST00000476183 MUC16Q8WXI7 14507 aa2.58□□□□□ -2
Retrieved 78 of 20,778 RNA–protein pairs in 73.5 ms