RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TNP1P09430 55 aa5.8□□□□□ -1.48
SHH-205ENST00000472308 KRTAP5-2Q701N4 177 aa5.77□□□□□ -1.49
SHH-205ENST00000472308 PCP4L1A6NKN8 68 aa5.74□□□□□ -1.49
SHH-205ENST00000472308 A0A1B0GU33 70 aa5.73□□□□□ -1.49
SHH-205ENST00000472308 SPANXA2-OT1Q8N9U9 137 aa5.71□□□□□ -1.5
SHH-205ENST00000472308 SNURFQ9Y675 71 aa5.71□□□□□ -1.5
SHH-205ENST00000472308 SERP1Q9Y6X1 66 aa5.71□□□□□ -1.5
SHH-205ENST00000472308 SEC61GP60059 68 aa5.69□□□□□ -1.5
SHH-205ENST00000472308 SMIM20Q8N5G0 67 aa5.62□□□□□ -1.51
SHH-205ENST00000472308 OBSCNQ5VST9 7968 aa5.61□□□□□ -1.51
SHH-205ENST00000472308 COA5Q86WW8 74 aa5.61□□□□□ -1.51
SHH-205ENST00000472308 A8MU10 97 aa5.6□□□□□ -1.51
SHH-205ENST00000472308 KRTAP9-9Q9BYP9 154 aa5.56□□□□□ -1.52
SHH-205ENST00000472308 SMIM26A0A096LP01 95 aa5.54□□□□□ -1.52
SHH-205ENST00000472308 KRTAP6-1Q3LI64 71 aa5.52□□□□□ -1.53
SHH-205ENST00000472308 MT1AP04731 61 aa5.48□□□□□ -1.53
SHH-205ENST00000472308 J3QR89 54 aa5.46□□□□□ -1.54
SHH-205ENST00000472308 A0A1B0GV90 55 aa5.44□□□□□ -1.54
SHH-205ENST00000472308 KRTAP6-2Q3LI66 62 aa5.4□□□□□ -1.54
SHH-205ENST00000472308 KRTAP19-4Q3LI73 84 aa5.36□□□□□ -1.55
SHH-205ENST00000472308 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
SHH-205ENST00000472308 A0A1B0GU69 56 aa5.3□□□□□ -1.56
SHH-205ENST00000472308 KRTAP5-1Q6L8H4 278 aa5.3□□□□□ -1.56
SHH-205ENST00000472308 SERP2Q8N6R1 65 aa5.3□□□□□ -1.56
SHH-205ENST00000472308 LCE3CQ5T5A8 94 aa5.29□□□□□ -1.56
SHH-205ENST00000472308 KRTAP25-1Q3LHN0 102 aa5.24□□□□□ -1.57
SHH-205ENST00000472308 K7ERU9 68 aa5.2□□□□□ -1.58
SHH-205ENST00000472308 KRTAP15-1Q3LI76 137 aa5.19□□□□□ -1.58
SHH-205ENST00000472308 KRTAP9-6A8MVA2 160 aa5.09□□□□□ -1.59
SHH-205ENST00000472308 H7BZZ5 65 aa5.02□□□□□ -1.61
SHH-205ENST00000472308 MT3P25713 68 aa5.02□□□□□ -1.61
SHH-205ENST00000472308 PRR15LQ9BU68 103 aa4.94□□□□□ -1.62
SHH-205ENST00000472308 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.63
SHH-205ENST00000472308 COX7CP15954 63 aa4.88□□□□□ -1.63
SHH-205ENST00000472308 LCE1EQ5T753 118 aa4.78□□□□□ -1.64
SHH-205ENST00000472308 UQCR11O14957 56 aa4.75□□□□□ -1.65
SHH-205ENST00000472308 LINC01558Q9Y6Z2 57 aa4.75□□□□□ -1.65
SHH-205ENST00000472308 ANAPC13Q9BS18 74 aa4.65□□□□□ -1.67
SHH-205ENST00000472308 KRTAP4-2Q9BYR5 136 aa4.64□□□□□ -1.67
SHH-205ENST00000472308 MIR22HGQ0VDD5 57 aa4.59□□□□□ -1.67
SHH-205ENST00000472308 K7ERS5 55 aa4.57□□□□□ -1.68
SHH-205ENST00000472308 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
SHH-205ENST00000472308 ATP5EP56381 51 aaPredicted RBP4.55□□□□□ -1.68
SHH-205ENST00000472308 CCDC179H3BU77 68 aa4.53□□□□□ -1.68
SHH-205ENST00000472308 RPS28P62857 69 aaKnown RBP4.45□□□□□ -1.7
SHH-205ENST00000472308 LCE1CQ5T751 118 aa4.45□□□□□ -1.7
SHH-205ENST00000472308 TMEM258P61165 79 aa4.43□□□□□ -1.7
SHH-205ENST00000472308 KRTAP4-12Q9BQ66 201 aa4.43□□□□□ -1.7
SHH-205ENST00000472308 CDC42SE1Q9NRR8 79 aa4.28□□□□□ -1.72
SHH-205ENST00000472308 Q1T7F1 81 aa4.24□□□□□ -1.73
SHH-205ENST00000472308 KRTAP5-11Q6L8G4 156 aa4.23□□□□□ -1.73
SHH-205ENST00000472308 V9GYY9 64 aa4.2□□□□□ -1.74
SHH-205ENST00000472308 ROMO1P60602 79 aa4.19□□□□□ -1.74
SHH-205ENST00000472308 PSPHP1O15172 72 aa4.13□□□□□ -1.75
SHH-205ENST00000472308 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
SHH-205ENST00000472308 PHGR1C9JFL3 82 aa4.07□□□□□ -1.76
SHH-205ENST00000472308 SVIPQ8NHG7 77 aa4.04□□□□□ -1.76
SHH-205ENST00000472308 A6NED7 52 aa3.98□□□□□ -1.77
SHH-205ENST00000472308 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.98□□□□□ -1.77
SHH-205ENST00000472308 PCP4P48539 62 aa3.94□□□□□ -1.78
SHH-205ENST00000472308 KRTAP21-2Q3LI59 83 aa3.66□□□□□ -1.82
SHH-205ENST00000472308 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
SHH-205ENST00000472308 MUC19Q7Z5P9 8384 aa3.5□□□□□ -1.85
SHH-205ENST00000472308 BRK1Q8WUW1 75 aa3.47□□□□□ -1.85
SHH-205ENST00000472308 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
SHH-205ENST00000472308 LCE3EQ5T5B0 92 aa3.31□□□□□ -1.88
SHH-205ENST00000472308 PMAIP1Q13794 54 aa3.27□□□□□ -1.89
SHH-205ENST00000472308 PRAC1Q96KF2 57 aa3.1□□□□□ -1.91
SHH-205ENST00000472308 PRO0628Q9UI54 55 aa3.1□□□□□ -1.91
SHH-205ENST00000472308 KRTAP21-1Q3LI58 79 aa3.09□□□□□ -1.91
SHH-205ENST00000472308 KTN1-AS1Q86SY8 53 aa2.95□□□□□ -1.94
SHH-205ENST00000472308 A0A0A0MQY5 61 aa2.83□□□□□ -1.96
SHH-205ENST00000472308 H3BS24 57 aa2.79□□□□□ -1.96
SHH-205ENST00000472308 LUZP6Q538Z0 58 aa2.69□□□□□ -1.98
SHH-205ENST00000472308 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.02
SHH-205ENST00000472308 NDUFAF8A1L188 74 aa2.21□□□□□ -2.06
SHH-205ENST00000472308 PRM1P04553 51 aa2.12□□□□□ -2.07
SHH-205ENST00000472308 INE1O15225 51 aa1.89□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 120.4 ms