RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 MACF1Q9UPN3 7388 aaKnown RBP5.9□□□□□ -1.47
SMARCD3-206ENST00000470588 KRTAP4-7Q9BYR0 210 aa5.83□□□□□ -1.48
SMARCD3-206ENST00000470588 A0A0A0MQY5 61 aa5.8□□□□□ -1.48
SMARCD3-206ENST00000470588 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.8□□□□□ -1.48
SMARCD3-206ENST00000470588 KRTAP5-9P26371 169 aa5.79□□□□□ -1.48
SMARCD3-206ENST00000470588 KRTAP19-3Q7Z4W3 81 aa5.78□□□□□ -1.48
SMARCD3-206ENST00000470588 KRTAP9-6A8MVA2 160 aa5.76□□□□□ -1.49
SMARCD3-206ENST00000470588 MT1GP13640 62 aa5.75□□□□□ -1.49
SMARCD3-206ENST00000470588 KRTAP6-3Q3LI67 103 aa5.7□□□□□ -1.5
SMARCD3-206ENST00000470588 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
SMARCD3-206ENST00000470588 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
SMARCD3-206ENST00000470588 MT1MQ8N339 61 aa5.67□□□□□ -1.5
SMARCD3-206ENST00000470588 KRTAP9-7A8MTY7 169 aa5.65□□□□□ -1.51
SMARCD3-206ENST00000470588 LCE5AQ5TCM9 118 aa5.65□□□□□ -1.51
SMARCD3-206ENST00000470588 SPRR2EP22531 72 aa5.6□□□□□ -1.51
SMARCD3-206ENST00000470588 SPRR2BP35325 72 aa5.6□□□□□ -1.51
SMARCD3-206ENST00000470588 SPRR2AP35326 72 aa5.6□□□□□ -1.51
SMARCD3-206ENST00000470588 LCE1AQ5T7P2 110 aa5.6□□□□□ -1.51
SMARCD3-206ENST00000470588 KRTAP4-3Q9BYR4 195 aa5.57□□□□□ -1.52
SMARCD3-206ENST00000470588 KRTAP2-3P0C7H8 128 aa5.5□□□□□ -1.53
SMARCD3-206ENST00000470588 KRTAP2-4Q9BYR9 128 aa5.5□□□□□ -1.53
SMARCD3-206ENST00000470588 KRTAP2-1Q9BYU5 128 aa5.5□□□□□ -1.53
SMARCD3-206ENST00000470588 MDN1Q9NU22 5596 aa5.47□□□□□ -1.53
SMARCD3-206ENST00000470588 LOC100996750A0A140TA64 210 aa5.45□□□□□ -1.54
SMARCD3-206ENST00000470588 SPRR2DP22532 72 aa5.41□□□□□ -1.54
SMARCD3-206ENST00000470588 INE1O15225 51 aa5.38□□□□□ -1.55
SMARCD3-206ENST00000470588 NEBP20929 6669 aa5.2□□□□□ -1.58
SMARCD3-206ENST00000470588 DSTQ03001 7570 aaKnown RBP5.19□□□□□ -1.58
SMARCD3-206ENST00000470588 LCE3BQ5TA77 95 aa5.18□□□□□ -1.58
SMARCD3-206ENST00000470588 MT1AP04731 61 aa5.08□□□□□ -1.6
SMARCD3-206ENST00000470588 KRTAP5-5Q701N2 237 aaPredicted RBP5.06□□□□□ -1.6
SMARCD3-206ENST00000470588 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
SMARCD3-206ENST00000470588 KRTAP20-1Q3LI63 56 aa4.93□□□□□ -1.62
SMARCD3-206ENST00000470588 KRTAP2-2Q9BYT5 123 aa4.89□□□□□ -1.63
SMARCD3-206ENST00000470588 KRTAP5-4Q6L8H1 288 aa4.83□□□□□ -1.64
SMARCD3-206ENST00000470588 KRTAP4-6Q9BYQ5 205 aa4.83□□□□□ -1.64
SMARCD3-206ENST00000470588 KRTAP9-4Q9BYQ2 154 aa4.82□□□□□ -1.64
SMARCD3-206ENST00000470588 LCE4AQ5TA78 99 aa4.81□□□□□ -1.64
SMARCD3-206ENST00000470588 KRTAP12-4P60329 112 aa4.78□□□□□ -1.64
SMARCD3-206ENST00000470588 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
SMARCD3-206ENST00000470588 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
SMARCD3-206ENST00000470588 MT4P47944 62 aa4.67□□□□□ -1.66
SMARCD3-206ENST00000470588 LCE3DQ9BYE3 92 aa4.64□□□□□ -1.67
SMARCD3-206ENST00000470588 MT3P25713 68 aa4.6□□□□□ -1.67
SMARCD3-206ENST00000470588 KRTAP6-2Q3LI66 62 aa4.57□□□□□ -1.68
SMARCD3-206ENST00000470588 LCE1DQ5T752 114 aa4.56□□□□□ -1.68
SMARCD3-206ENST00000470588 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
SMARCD3-206ENST00000470588 KRTAP20-2Q3LI61 65 aa4.54□□□□□ -1.68
SMARCD3-206ENST00000470588 HMCN1Q96RW7 5635 aa4.45□□□□□ -1.7
SMARCD3-206ENST00000470588 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
SMARCD3-206ENST00000470588 KRTAP5-3Q6L8H2 238 aa4.34□□□□□ -1.71
SMARCD3-206ENST00000470588 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.75
SMARCD3-206ENST00000470588 PRM1P04553 51 aa4.1□□□□□ -1.75
SMARCD3-206ENST00000470588 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
SMARCD3-206ENST00000470588 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
SMARCD3-206ENST00000470588 AHNAK2Q8IVF2 5795 aa3.95□□□□□ -1.78
SMARCD3-206ENST00000470588 KRTAP4-11Q9BYQ6 195 aa3.92□□□□□ -1.78
SMARCD3-206ENST00000470588 KRTAP5-10Q6L8G5 202 aa3.89□□□□□ -1.79
SMARCD3-206ENST00000470588 KRTAP5-1Q6L8H4 278 aa3.77□□□□□ -1.81
SMARCD3-206ENST00000470588 KRTAP5-8O75690 187 aa3.76□□□□□ -1.81
SMARCD3-206ENST00000470588 KRTAP5-7Q6L8G8 165 aa3.74□□□□□ -1.81
SMARCD3-206ENST00000470588 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
SMARCD3-206ENST00000470588 KRTAP9-9Q9BYP9 154 aa3.7□□□□□ -1.82
SMARCD3-206ENST00000470588 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
SMARCD3-206ENST00000470588 KRTAP4-2Q9BYR5 136 aa3.66□□□□□ -1.82
SMARCD3-206ENST00000470588 MUC5ACP98088 5654 aa3.65□□□□□ -1.82
SMARCD3-206ENST00000470588 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.43□□□□□ -1.86
SMARCD3-206ENST00000470588 KRTAP4-12Q9BQ66 201 aa3.3□□□□□ -1.88
SMARCD3-206ENST00000470588 KRTAP21-2Q3LI59 83 aa3.28□□□□□ -1.89
SMARCD3-206ENST00000470588 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
SMARCD3-206ENST00000470588 KRTAP5-11Q6L8G4 156 aa3.24□□□□□ -1.89
SMARCD3-206ENST00000470588 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
SMARCD3-206ENST00000470588 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
SMARCD3-206ENST00000470588 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
SMARCD3-206ENST00000470588 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
SMARCD3-206ENST00000470588 KRTAP21-1Q3LI58 79 aa2.58□□□□□ -2
SMARCD3-206ENST00000470588 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
SMARCD3-206ENST00000470588 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 67.8 ms