RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 KRTAP19-8Q3LI54 63 aa2.69□□□□□ -1.98
PTCD3-208ENST00000469585 TMEM258P61165 79 aa2.68□□□□□ -1.98
PTCD3-208ENST00000469585 SPINT4Q6UDR6 99 aa2.65□□□□□ -1.99
PTCD3-208ENST00000469585 A0A1B0GU33 70 aa2.64□□□□□ -1.99
PTCD3-208ENST00000469585 MT1BP07438 61 aa2.64□□□□□ -1.99
PTCD3-208ENST00000469585 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
PTCD3-208ENST00000469585 CYSTM1Q9H1C7 97 aa2.62□□□□□ -1.99
PTCD3-208ENST00000469585 A0A0D9SG42 100 aa2.6□□□□□ -1.99
PTCD3-208ENST00000469585 PMAIP1Q13794 54 aa2.58□□□□□ -2
PTCD3-208ENST00000469585 K7ERS5 55 aa2.57□□□□□ -2
PTCD3-208ENST00000469585 UQCR11O14957 56 aa2.56□□□□□ -2
PTCD3-208ENST00000469585 SPATA8Q6RVD6 105 aa2.56□□□□□ -2
PTCD3-208ENST00000469585 BRK1Q8WUW1 75 aa2.56□□□□□ -2
PTCD3-208ENST00000469585 USH2AO75445 5202 aa2.55□□□□□ -2
PTCD3-208ENST00000469585 LINC01558Q9Y6Z2 57 aa2.55□□□□□ -2
PTCD3-208ENST00000469585 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
PTCD3-208ENST00000469585 SSPOA2VEC9 5147 aa2.52□□□□□ -2.01
PTCD3-208ENST00000469585 MT1XP80297 61 aa2.52□□□□□ -2.01
PTCD3-208ENST00000469585 KRTAP13-4Q3LI77 160 aa2.51□□□□□ -2.01
PTCD3-208ENST00000469585 FCGBPQ9Y6R7 5405 aaPredicted RBP2.5□□□□□ -2.01
PTCD3-208ENST00000469585 KRTAP8-1Q8IUC2 63 aa2.5□□□□□ -2.01
PTCD3-208ENST00000469585 MIR22HGQ0VDD5 57 aa2.48□□□□□ -2.01
PTCD3-208ENST00000469585 KTN1-AS1Q86SY8 53 aa2.47□□□□□ -2.01
PTCD3-208ENST00000469585 A6NED7 52 aa2.46□□□□□ -2.02
PTCD3-208ENST00000469585 KRTAP12-1P59990 96 aa2.46□□□□□ -2.02
PTCD3-208ENST00000469585 Q1T7F1 81 aa2.46□□□□□ -2.02
PTCD3-208ENST00000469585 SPRR2FQ96RM1 72 aa2.46□□□□□ -2.02
PTCD3-208ENST00000469585 MACF1Q9UPN3 7388 aaKnown RBP2.46□□□□□ -2.02
PTCD3-208ENST00000469585 KRTAP5-8O75690 187 aa2.44□□□□□ -2.02
PTCD3-208ENST00000469585 TNP1P09430 55 aa2.44□□□□□ -2.02
PTCD3-208ENST00000469585 SPRR2EP22531 72 aa2.4□□□□□ -2.03
PTCD3-208ENST00000469585 SPRR2BP35325 72 aa2.4□□□□□ -2.03
PTCD3-208ENST00000469585 SPRR2AP35326 72 aa2.4□□□□□ -2.03
PTCD3-208ENST00000469585 CDC42SE1Q9NRR8 79 aa2.36□□□□□ -2.03
PTCD3-208ENST00000469585 KRTAP20-1Q3LI63 56 aa2.35□□□□□ -2.03
PTCD3-208ENST00000469585 SYNE2Q8WXH0 6885 aaKnown RBP2.34□□□□□ -2.03
PTCD3-208ENST00000469585 KRTAP25-1Q3LHN0 102 aa2.34□□□□□ -2.03
PTCD3-208ENST00000469585 SPRR2DP22532 72 aa2.33□□□□□ -2.04
PTCD3-208ENST00000469585 KRTAP5-7Q6L8G8 165 aa2.32□□□□□ -2.04
PTCD3-208ENST00000469585 KRTAP12-3P60328 96 aa2.31□□□□□ -2.04
PTCD3-208ENST00000469585 C10orf95Q9H7T3 257 aa2.31□□□□□ -2.04
PTCD3-208ENST00000469585 KRTAP2-3P0C7H8 128 aa2.3□□□□□ -2.04
PTCD3-208ENST00000469585 KRTAP2-4Q9BYR9 128 aa2.3□□□□□ -2.04
PTCD3-208ENST00000469585 KRTAP12-4P60329 112 aa2.27□□□□□ -2.05
PTCD3-208ENST00000469585 ROMO1P60602 79 aa2.27□□□□□ -2.05
PTCD3-208ENST00000469585 KRTAP19-5Q3LI72 72 aa2.26□□□□□ -2.05
PTCD3-208ENST00000469585 MT1EP04732 61 aa2.24□□□□□ -2.05
PTCD3-208ENST00000469585 KRTAP19-3Q7Z4W3 81 aa2.24□□□□□ -2.05
PTCD3-208ENST00000469585 KRTAP2-1Q9BYU5 128 aa2.23□□□□□ -2.05
PTCD3-208ENST00000469585 MT1GP13640 62 aa2.22□□□□□ -2.05
PTCD3-208ENST00000469585 KRTAP19-7Q3SYF9 63 aa2.22□□□□□ -2.05
PTCD3-208ENST00000469585 KMT2DO14686 5537 aa2.22□□□□□ -2.05
PTCD3-208ENST00000469585 NEBP20929 6669 aa2.18□□□□□ -2.06
PTCD3-208ENST00000469585 MUC12Q9UKN1 5478 aa2.17□□□□□ -2.06
PTCD3-208ENST00000469585 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
PTCD3-208ENST00000469585 MT1LQ93083 61 aa2.16□□□□□ -2.06
PTCD3-208ENST00000469585 MDN1Q9NU22 5596 aa2.14□□□□□ -2.07
PTCD3-208ENST00000469585 MT1MQ8N339 61 aa2.13□□□□□ -2.07
PTCD3-208ENST00000469585 DSTQ03001 7570 aaKnown RBP2.02□□□□□ -2.09
PTCD3-208ENST00000469585 MT4P47944 62 aa2□□□□□ -2.09
PTCD3-208ENST00000469585 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
PTCD3-208ENST00000469585 MT1AP04731 61 aa1.86□□□□□ -2.11
PTCD3-208ENST00000469585 KRTAP20-2Q3LI61 65 aa1.85□□□□□ -2.11
PTCD3-208ENST00000469585 KRTAP6-1Q3LI64 71 aa1.8□□□□□ -2.12
PTCD3-208ENST00000469585 HMCN1Q96RW7 5635 aa1.77□□□□□ -2.13
PTCD3-208ENST00000469585 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
PTCD3-208ENST00000469585 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
PTCD3-208ENST00000469585 GPR98Q8WXG9 6306 aa1.69□□□□□ -2.14
PTCD3-208ENST00000469585 INE1O15225 51 aa1.68□□□□□ -2.14
PTCD3-208ENST00000469585 SYNE1Q8NF91 8797 aaKnown RBP1.65□□□□□ -2.14
PTCD3-208ENST00000469585 AHNAK2Q8IVF2 5795 aa1.62□□□□□ -2.15
PTCD3-208ENST00000469585 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
PTCD3-208ENST00000469585 MUC5BQ9HC84 5762 aaPredicted RBP1.32□□□□□ -2.2
PTCD3-208ENST00000469585 AHNAKQ09666 5890 aaKnown RBP1.28□□□□□ -2.2
PTCD3-208ENST00000469585 PRM1P04553 51 aa1.14□□□□□ -2.23
PTCD3-208ENST00000469585 PHGR1C9JFL3 82 aa1.09□□□□□ -2.23
PTCD3-208ENST00000469585 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.24
PTCD3-208ENST00000469585 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 233 ms