RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
HPS4-209ENST00000466781 KRTAP19-6Q3LI70 58 aa2.9□□□□□ -1.94
HPS4-209ENST00000466781 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
HPS4-209ENST00000466781 SPRR5A0A1B0GTR4 108 aa2.88□□□□□ -1.95
HPS4-209ENST00000466781 KRTAP19-3Q7Z4W3 81 aa2.86□□□□□ -1.95
HPS4-209ENST00000466781 KRTAP4-7Q9BYR0 210 aa2.86□□□□□ -1.95
HPS4-209ENST00000466781 LCE2AQ5TA79 106 aaPredicted RBP2.86□□□□□ -1.95
HPS4-209ENST00000466781 MT4P47944 62 aa2.82□□□□□ -1.96
HPS4-209ENST00000466781 MT1EP04732 61 aa2.79□□□□□ -1.96
HPS4-209ENST00000466781 MT1LQ93083 61 aa2.78□□□□□ -1.96
HPS4-209ENST00000466781 MT3P25713 68 aa2.76□□□□□ -1.97
HPS4-209ENST00000466781 LOC100996750A0A140TA64 210 aa2.74□□□□□ -1.97
HPS4-209ENST00000466781 LCE1BQ5T7P3 118 aa2.72□□□□□ -1.97
HPS4-209ENST00000466781 KRTAP4-3Q9BYR4 195 aa2.72□□□□□ -1.97
HPS4-209ENST00000466781 MT1MQ8N339 61 aa2.71□□□□□ -1.97
HPS4-209ENST00000466781 LCE1DQ5T752 114 aa2.7□□□□□ -1.98
HPS4-209ENST00000466781 KRTAP6-3Q3LI67 103 aa2.68□□□□□ -1.98
HPS4-209ENST00000466781 PRM1P04553 51 aa2.68□□□□□ -1.98
HPS4-209ENST00000466781 USH2AO75445 5202 aa2.66□□□□□ -1.98
HPS4-209ENST00000466781 KRTAP2-3P0C7H8 128 aa2.65□□□□□ -1.99
HPS4-209ENST00000466781 KRTAP2-4Q9BYR9 128 aa2.65□□□□□ -1.99
HPS4-209ENST00000466781 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.64□□□□□ -1.99
HPS4-209ENST00000466781 LCE5AQ5TCM9 118 aa2.6□□□□□ -1.99
HPS4-209ENST00000466781 LCE1AQ5T7P2 110 aa2.54□□□□□ -2
HPS4-209ENST00000466781 KRTAP19-7Q3SYF9 63 aa2.53□□□□□ -2.01
HPS4-209ENST00000466781 MT1AP04731 61 aa2.52□□□□□ -2.01
HPS4-209ENST00000466781 FSIP2Q5CZC0 6907 aa2.51□□□□□ -2.01
HPS4-209ENST00000466781 SSPOA2VEC9 5147 aa2.51□□□□□ -2.01
HPS4-209ENST00000466781 KMT2DO14686 5537 aa2.5□□□□□ -2.01
HPS4-209ENST00000466781 SYNE2Q8WXH0 6885 aaKnown RBP2.5□□□□□ -2.01
HPS4-209ENST00000466781 KRTAP2-2Q9BYT5 123 aa2.5□□□□□ -2.01
HPS4-209ENST00000466781 KRTAP2-1Q9BYU5 128 aa2.5□□□□□ -2.01
HPS4-209ENST00000466781 LCE4AQ5TA78 99 aa2.49□□□□□ -2.01
HPS4-209ENST00000466781 KRTAP4-9Q9BYQ8 210 aa2.49□□□□□ -2.01
HPS4-209ENST00000466781 SYNE1Q8NF91 8797 aaKnown RBP2.46□□□□□ -2.02
HPS4-209ENST00000466781 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
HPS4-209ENST00000466781 LCE1EQ5T753 118 aa2.42□□□□□ -2.02
HPS4-209ENST00000466781 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
HPS4-209ENST00000466781 KRTAP6-1Q3LI64 71 aa2.37□□□□□ -2.03
HPS4-209ENST00000466781 KRTAP9-4Q9BYQ2 154 aa2.36□□□□□ -2.03
HPS4-209ENST00000466781 KRTAP6-2Q3LI66 62 aa2.35□□□□□ -2.03
HPS4-209ENST00000466781 GPR98Q8WXG9 6306 aa2.3□□□□□ -2.04
HPS4-209ENST00000466781 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
HPS4-209ENST00000466781 FCGBPQ9Y6R7 5405 aaPredicted RBP2.28□□□□□ -2.04
HPS4-209ENST00000466781 NEBP20929 6669 aa2.26□□□□□ -2.05
HPS4-209ENST00000466781 KRTAP5-9P26371 169 aa2.24□□□□□ -2.05
HPS4-209ENST00000466781 MACF1Q9UPN3 7388 aaKnown RBP2.21□□□□□ -2.06
HPS4-209ENST00000466781 KRTAP9-9Q9BYP9 154 aa2.2□□□□□ -2.06
HPS4-209ENST00000466781 MUC12Q9UKN1 5478 aa2.19□□□□□ -2.06
HPS4-209ENST00000466781 OBSCNQ5VST9 7968 aa2.18□□□□□ -2.06
HPS4-209ENST00000466781 MDN1Q9NU22 5596 aa2.15□□□□□ -2.07
HPS4-209ENST00000466781 KRTAP4-6Q9BYQ5 205 aa2.07□□□□□ -2.08
HPS4-209ENST00000466781 KRTAP20-2Q3LI61 65 aa2.05□□□□□ -2.08
HPS4-209ENST00000466781 KRTAP5-4Q6L8H1 288 aa2□□□□□ -2.09
HPS4-209ENST00000466781 KRTAP4-11Q9BYQ6 195 aa1.95□□□□□ -2.1
HPS4-209ENST00000466781 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
HPS4-209ENST00000466781 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
HPS4-209ENST00000466781 KRTAP4-12Q9BQ66 201 aa1.85□□□□□ -2.11
HPS4-209ENST00000466781 KRTAP4-2Q9BYR5 136 aa1.85□□□□□ -2.11
HPS4-209ENST00000466781 KRTAP4-4Q9BYR3 166 aa1.85□□□□□ -2.11
HPS4-209ENST00000466781 KRTAP5-5Q701N2 237 aaPredicted RBP1.79□□□□□ -2.12
HPS4-209ENST00000466781 HMCN1Q96RW7 5635 aa1.78□□□□□ -2.13
HPS4-209ENST00000466781 AHNAK2Q8IVF2 5795 aa1.77□□□□□ -2.13
HPS4-209ENST00000466781 KRTAP5-3Q6L8H2 238 aa1.72□□□□□ -2.13
HPS4-209ENST00000466781 AHNAKQ09666 5890 aaKnown RBP1.62□□□□□ -2.15
HPS4-209ENST00000466781 KRTAP5-8O75690 187 aa1.57□□□□□ -2.16
HPS4-209ENST00000466781 KRTAP5-7Q6L8G8 165 aa1.56□□□□□ -2.16
HPS4-209ENST00000466781 PHGR1C9JFL3 82 aa1.54□□□□□ -2.16
HPS4-209ENST00000466781 MUC5BQ9HC84 5762 aaPredicted RBP1.52□□□□□ -2.17
HPS4-209ENST00000466781 KRTAP5-2Q701N4 177 aa1.51□□□□□ -2.17
HPS4-209ENST00000466781 MUC5ACP98088 5654 aa1.47□□□□□ -2.17
HPS4-209ENST00000466781 KRTAP5-10Q6L8G5 202 aa1.44□□□□□ -2.18
HPS4-209ENST00000466781 KRTAP5-1Q6L8H4 278 aa1.33□□□□□ -2.2
HPS4-209ENST00000466781 KRTAP5-11Q6L8G4 156 aa1.31□□□□□ -2.2
HPS4-209ENST00000466781 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.22□□□□□ -2.21
HPS4-209ENST00000466781 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
HPS4-209ENST00000466781 KRTAP21-2Q3LI59 83 aa1.19□□□□□ -2.22
HPS4-209ENST00000466781 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 132.7 ms