RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 KRTAP4-3Q9BYR4 195 aa6.07□□□□□ -1.44
COL7A1-206ENST00000466591 CCDC179H3BU77 68 aa6.03□□□□□ -1.44
COL7A1-206ENST00000466591 HMCN1Q96RW7 5635 aa6.02□□□□□ -1.45
COL7A1-206ENST00000466591 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
COL7A1-206ENST00000466591 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
COL7A1-206ENST00000466591 UQCR11O14957 56 aa5.97□□□□□ -1.45
COL7A1-206ENST00000466591 KRTAP5-4Q6L8H1 288 aa5.94□□□□□ -1.46
COL7A1-206ENST00000466591 KRTAP4-6Q9BYQ5 205 aa5.91□□□□□ -1.46
COL7A1-206ENST00000466591 KRTAP4-7Q9BYR0 210 aa5.88□□□□□ -1.47
COL7A1-206ENST00000466591 K7ERS5 55 aa5.86□□□□□ -1.47
COL7A1-206ENST00000466591 AHNAK2Q8IVF2 5795 aa5.84□□□□□ -1.47
COL7A1-206ENST00000466591 TMEM258P61165 79 aa5.84□□□□□ -1.47
COL7A1-206ENST00000466591 MIR22HGQ0VDD5 57 aa5.81□□□□□ -1.48
COL7A1-206ENST00000466591 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
COL7A1-206ENST00000466591 KRTAP5-10Q6L8G5 202 aa5.78□□□□□ -1.48
COL7A1-206ENST00000466591 KRTAP12-4P60329 112 aa5.71□□□□□ -1.5
COL7A1-206ENST00000466591 PCP4P48539 62 aa5.68□□□□□ -1.5
COL7A1-206ENST00000466591 KRTAP20-2Q3LI61 65 aa5.68□□□□□ -1.5
COL7A1-206ENST00000466591 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
COL7A1-206ENST00000466591 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
COL7A1-206ENST00000466591 KRTAP5-5Q701N2 237 aaPredicted RBP5.64□□□□□ -1.51
COL7A1-206ENST00000466591 V9GYY9 64 aa5.63□□□□□ -1.51
COL7A1-206ENST00000466591 PSPHP1O15172 72 aa5.62□□□□□ -1.51
COL7A1-206ENST00000466591 KRTAP19-4Q3LI73 84 aa5.6□□□□□ -1.51
COL7A1-206ENST00000466591 LOC100996750A0A140TA64 210 aa5.59□□□□□ -1.51
COL7A1-206ENST00000466591 KRTAP5-7Q6L8G8 165 aa5.59□□□□□ -1.51
COL7A1-206ENST00000466591 KRTAP15-1Q3LI76 137 aa5.53□□□□□ -1.52
COL7A1-206ENST00000466591 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
COL7A1-206ENST00000466591 A6NED7 52 aa5.47□□□□□ -1.53
COL7A1-206ENST00000466591 Q1T7F1 81 aa5.47□□□□□ -1.53
COL7A1-206ENST00000466591 LCE3CQ5T5A8 94 aa5.47□□□□□ -1.53
COL7A1-206ENST00000466591 CDC42SE1Q9NRR8 79 aa5.46□□□□□ -1.54
COL7A1-206ENST00000466591 SYNE1Q8NF91 8797 aaKnown RBP5.39□□□□□ -1.55
COL7A1-206ENST00000466591 RPS28P62857 69 aaKnown RBP5.38□□□□□ -1.55
COL7A1-206ENST00000466591 ROMO1P60602 79 aa5.31□□□□□ -1.56
COL7A1-206ENST00000466591 MT1AP04731 61 aa5.29□□□□□ -1.56
COL7A1-206ENST00000466591 KRTAP6-1Q3LI64 71 aa5.25□□□□□ -1.57
COL7A1-206ENST00000466591 KRTAP4-11Q9BYQ6 195 aa5.23□□□□□ -1.57
COL7A1-206ENST00000466591 KRTAP5-2Q701N4 177 aa5.17□□□□□ -1.58
COL7A1-206ENST00000466591 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
COL7A1-206ENST00000466591 KRTAP6-2Q3LI66 62 aa5.08□□□□□ -1.6
COL7A1-206ENST00000466591 KRTAP9-6A8MVA2 160 aa5.05□□□□□ -1.6
COL7A1-206ENST00000466591 KRTAP5-8O75690 187 aa5.01□□□□□ -1.61
COL7A1-206ENST00000466591 KRTAP9-9Q9BYP9 154 aa4.91□□□□□ -1.62
COL7A1-206ENST00000466591 MT3P25713 68 aa4.89□□□□□ -1.63
COL7A1-206ENST00000466591 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
COL7A1-206ENST00000466591 MUC5ACP98088 5654 aa4.85□□□□□ -1.63
COL7A1-206ENST00000466591 AHNAKQ09666 5890 aaKnown RBP4.84□□□□□ -1.63
COL7A1-206ENST00000466591 MUC5BQ9HC84 5762 aaPredicted RBP4.81□□□□□ -1.64
COL7A1-206ENST00000466591 BRK1Q8WUW1 75 aa4.79□□□□□ -1.64
COL7A1-206ENST00000466591 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
COL7A1-206ENST00000466591 PRO0628Q9UI54 55 aa4.53□□□□□ -1.68
COL7A1-206ENST00000466591 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
COL7A1-206ENST00000466591 LCE1EQ5T753 118 aa4.46□□□□□ -1.7
COL7A1-206ENST00000466591 LCE1BQ5T7P3 118 aa4.33□□□□□ -1.72
COL7A1-206ENST00000466591 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
COL7A1-206ENST00000466591 PRAC1Q96KF2 57 aa4.19□□□□□ -1.74
COL7A1-206ENST00000466591 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
COL7A1-206ENST00000466591 SVIPQ8NHG7 77 aa4.15□□□□□ -1.75
COL7A1-206ENST00000466591 LCE1CQ5T751 118 aa4.13□□□□□ -1.75
COL7A1-206ENST00000466591 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
COL7A1-206ENST00000466591 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
COL7A1-206ENST00000466591 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
COL7A1-206ENST00000466591 LCE1FQ5T754 118 aa3.71□□□□□ -1.82
COL7A1-206ENST00000466591 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.7□□□□□ -1.82
COL7A1-206ENST00000466591 LCE3EQ5T5B0 92 aa3.69□□□□□ -1.82
COL7A1-206ENST00000466591 LUZP6Q538Z0 58 aa3.62□□□□□ -1.83
COL7A1-206ENST00000466591 PHGR1C9JFL3 82 aa3.47□□□□□ -1.85
COL7A1-206ENST00000466591 KRTAP21-2Q3LI59 83 aa3.42□□□□□ -1.86
COL7A1-206ENST00000466591 NDUFAF8A1L188 74 aa3.3□□□□□ -1.88
COL7A1-206ENST00000466591 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
COL7A1-206ENST00000466591 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
COL7A1-206ENST00000466591 A0A0A0MQY5 61 aa2.95□□□□□ -1.94
COL7A1-206ENST00000466591 INE1O15225 51 aa2.73□□□□□ -1.97
COL7A1-206ENST00000466591 PRM1P04553 51 aa2.7□□□□□ -1.98
COL7A1-206ENST00000466591 H3BS24 57 aa2.64□□□□□ -1.99
COL7A1-206ENST00000466591 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
COL7A1-206ENST00000466591 MUC16Q8WXI7 14507 aa2.12□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 103.7 ms