RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 V9GYY9 64 aa8.09□□□□□ -1.11
PTPN4-208ENST00000460289 K7ERS5 55 aa8.02□□□□□ -1.13
PTPN4-208ENST00000460289 Q1T7F1 81 aa7.99□□□□□ -1.13
PTPN4-208ENST00000460289 KRTAP4-9Q9BYQ8 210 aa7.99□□□□□ -1.13
PTPN4-208ENST00000460289 PSPHP1O15172 72 aa7.98□□□□□ -1.13
PTPN4-208ENST00000460289 KRTAP12-3P60328 96 aa7.98□□□□□ -1.13
PTPN4-208ENST00000460289 KRTAP25-1Q3LHN0 102 aa7.96□□□□□ -1.14
PTPN4-208ENST00000460289 KRTAP4-3Q9BYR4 195 aa7.91□□□□□ -1.14
PTPN4-208ENST00000460289 LCE4AQ5TA78 99 aa7.88□□□□□ -1.15
PTPN4-208ENST00000460289 LCE1DQ5T752 114 aa7.83□□□□□ -1.16
PTPN4-208ENST00000460289 KRTAP4-7Q9BYR0 210 aa7.76□□□□□ -1.17
PTPN4-208ENST00000460289 MT4P47944 62 aa7.75□□□□□ -1.17
PTPN4-208ENST00000460289 A6NED7 52 aa7.74□□□□□ -1.17
PTPN4-208ENST00000460289 KRTAP5-4Q6L8H1 288 aa7.72□□□□□ -1.17
PTPN4-208ENST00000460289 KRTAP23-1A1A580 65 aa7.68□□□□□ -1.18
PTPN4-208ENST00000460289 HMCN1Q96RW7 5635 aa7.67□□□□□ -1.18
PTPN4-208ENST00000460289 GPR98Q8WXG9 6306 aa7.67□□□□□ -1.18
PTPN4-208ENST00000460289 RPS28P62857 69 aaKnown RBP7.63□□□□□ -1.19
PTPN4-208ENST00000460289 KRTAP19-4Q3LI73 84 aa7.62□□□□□ -1.19
PTPN4-208ENST00000460289 CDC42SE1Q9NRR8 79 aa7.57□□□□□ -1.2
PTPN4-208ENST00000460289 KRTAP4-6Q9BYQ5 205 aa7.53□□□□□ -1.2
PTPN4-208ENST00000460289 PCP4P48539 62 aa7.5□□□□□ -1.21
PTPN4-208ENST00000460289 KRTAP15-1Q3LI76 137 aa7.49□□□□□ -1.21
PTPN4-208ENST00000460289 ROMO1P60602 79 aa7.44□□□□□ -1.22
PTPN4-208ENST00000460289 KRTAP5-5Q701N2 237 aaPredicted RBP7.44□□□□□ -1.22
PTPN4-208ENST00000460289 LCE3CQ5T5A8 94 aa7.36□□□□□ -1.23
PTPN4-208ENST00000460289 LOC100996750A0A140TA64 210 aa7.35□□□□□ -1.23
PTPN4-208ENST00000460289 AHNAK2Q8IVF2 5795 aa7.3□□□□□ -1.24
PTPN4-208ENST00000460289 KRTAP12-4P60329 112 aa7.3□□□□□ -1.24
PTPN4-208ENST00000460289 SPRR5A0A1B0GTR4 108 aa7.29□□□□□ -1.24
PTPN4-208ENST00000460289 KRTAP20-2Q3LI61 65 aa7.28□□□□□ -1.24
PTPN4-208ENST00000460289 KRTAP5-10Q6L8G5 202 aa7.23□□□□□ -1.25
PTPN4-208ENST00000460289 KRTAP5-3Q6L8H2 238 aa7.1□□□□□ -1.27
PTPN4-208ENST00000460289 SYNE1Q8NF91 8797 aaKnown RBP7.08□□□□□ -1.28
PTPN4-208ENST00000460289 MT1AP04731 61 aa6.97□□□□□ -1.29
PTPN4-208ENST00000460289 KRTAP5-7Q6L8G8 165 aa6.95□□□□□ -1.3
PTPN4-208ENST00000460289 KRTAP6-1Q3LI64 71 aa6.91□□□□□ -1.3
PTPN4-208ENST00000460289 KRTAP9-6A8MVA2 160 aa6.88□□□□□ -1.31
PTPN4-208ENST00000460289 KRTAP5-2Q701N4 177 aa6.77□□□□□ -1.33
PTPN4-208ENST00000460289 KRTAP9-4Q9BYQ2 154 aa6.75□□□□□ -1.33
PTPN4-208ENST00000460289 BRK1Q8WUW1 75 aa6.67□□□□□ -1.34
PTPN4-208ENST00000460289 KRTAP4-11Q9BYQ6 195 aa6.64□□□□□ -1.35
PTPN4-208ENST00000460289 KRTAP6-2Q3LI66 62 aa6.6□□□□□ -1.35
PTPN4-208ENST00000460289 KRTAP4-12Q9BQ66 201 aa6.47□□□□□ -1.37
PTPN4-208ENST00000460289 MT3P25713 68 aa6.41□□□□□ -1.38
PTPN4-208ENST00000460289 KRTAP5-8O75690 187 aa6.4□□□□□ -1.38
PTPN4-208ENST00000460289 KRTAP9-9Q9BYP9 154 aa6.31□□□□□ -1.4
PTPN4-208ENST00000460289 OBSCNQ5VST9 7968 aa6.3□□□□□ -1.4
PTPN4-208ENST00000460289 PMAIP1Q13794 54 aa6.29□□□□□ -1.4
PTPN4-208ENST00000460289 KRTAP5-1Q6L8H4 278 aa6.05□□□□□ -1.44
PTPN4-208ENST00000460289 MUC5BQ9HC84 5762 aaPredicted RBP6.04□□□□□ -1.44
PTPN4-208ENST00000460289 PRAC1Q96KF2 57 aa6□□□□□ -1.45
PTPN4-208ENST00000460289 MUC5ACP98088 5654 aa5.99□□□□□ -1.45
PTPN4-208ENST00000460289 AHNAKQ09666 5890 aaKnown RBP5.98□□□□□ -1.45
PTPN4-208ENST00000460289 H3BS24 57 aa5.92□□□□□ -1.46
PTPN4-208ENST00000460289 LCE1EQ5T753 118 aa5.87□□□□□ -1.47
PTPN4-208ENST00000460289 PRO0628Q9UI54 55 aa5.8□□□□□ -1.48
PTPN4-208ENST00000460289 KRTAP4-2Q9BYR5 136 aa5.72□□□□□ -1.49
PTPN4-208ENST00000460289 KTN1-AS1Q86SY8 53 aa5.56□□□□□ -1.52
PTPN4-208ENST00000460289 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
PTPN4-208ENST00000460289 LCE1CQ5T751 118 aa5.44□□□□□ -1.54
PTPN4-208ENST00000460289 LCE3DQ9BYE3 92 aa5.34□□□□□ -1.55
PTPN4-208ENST00000460289 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
PTPN4-208ENST00000460289 LUZP6Q538Z0 58 aa5.17□□□□□ -1.58
PTPN4-208ENST00000460289 LCE3EQ5T5B0 92 aa5.03□□□□□ -1.6
PTPN4-208ENST00000460289 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.95□□□□□ -1.62
PTPN4-208ENST00000460289 KRTAP5-11Q6L8G4 156 aa4.9□□□□□ -1.63
PTPN4-208ENST00000460289 LCE1FQ5T754 118 aa4.79□□□□□ -1.64
PTPN4-208ENST00000460289 KRTAP21-2Q3LI59 83 aa4.55□□□□□ -1.68
PTPN4-208ENST00000460289 PHGR1C9JFL3 82 aa4.23□□□□□ -1.73
PTPN4-208ENST00000460289 KRTAP4-4Q9BYR3 166 aa4.14□□□□□ -1.75
PTPN4-208ENST00000460289 NDUFAF8A1L188 74 aa4.06□□□□□ -1.76
PTPN4-208ENST00000460289 MUC19Q7Z5P9 8384 aa3.87□□□□□ -1.79
PTPN4-208ENST00000460289 PRM1P04553 51 aa3.78□□□□□ -1.8
PTPN4-208ENST00000460289 INE1O15225 51 aa3.3□□□□□ -1.88
PTPN4-208ENST00000460289 A0A0A0MQY5 61 aa3.22□□□□□ -1.89
PTPN4-208ENST00000460289 KRTAP21-1Q3LI58 79 aa3.22□□□□□ -1.89
PTPN4-208ENST00000460289 MUC16Q8WXI7 14507 aa2.68□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 91.2 ms