RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 RHPN1-AS1Q9BWJ2 59 aa2.27□□□□□ -2.05
VPS41-209ENST00000457055 DEFB1P60022 68 aa2.26□□□□□ -2.05
VPS41-209ENST00000457055 HTN1P15515 57 aa2.24□□□□□ -2.05
VPS41-209ENST00000457055 KRTAP12-1P59990 96 aa2.23□□□□□ -2.05
VPS41-209ENST00000457055 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
VPS41-209ENST00000457055 MUC17Q685J3 4493 aa2.22□□□□□ -2.05
VPS41-209ENST00000457055 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
VPS41-209ENST00000457055 KRTAP5-7Q6L8G8 165 aa2.21□□□□□ -2.06
VPS41-209ENST00000457055 FCGBPQ9Y6R7 5405 aaPredicted RBP2.2□□□□□ -2.06
VPS41-209ENST00000457055 USH2AO75445 5202 aa2.19□□□□□ -2.06
VPS41-209ENST00000457055 SYNE2Q8WXH0 6885 aaKnown RBP2.18□□□□□ -2.06
VPS41-209ENST00000457055 A0A096LPF7 62 aa2.17□□□□□ -2.06
VPS41-209ENST00000457055 MACF1Q9UPN3 7388 aaKnown RBP2.16□□□□□ -2.06
VPS41-209ENST00000457055 M0QZ58 72 aa2.14□□□□□ -2.07
VPS41-209ENST00000457055 KRTAP10-10P60014 251 aa2.14□□□□□ -2.07
VPS41-209ENST00000457055 KRTAP4-1Q9BYQ7 146 aa2.14□□□□□ -2.07
VPS41-209ENST00000457055 KRTAP20-1Q3LI63 56 aa2.12□□□□□ -2.07
VPS41-209ENST00000457055 H3BNG1 76 aa2.09□□□□□ -2.07
VPS41-209ENST00000457055 NEBP20929 6669 aa2.08□□□□□ -2.08
VPS41-209ENST00000457055 MT1HP80294 61 aa2.08□□□□□ -2.08
VPS41-209ENST00000457055 KRTAP6-3Q3LI67 103 aa2.08□□□□□ -2.08
VPS41-209ENST00000457055 KRTAP19-2Q3LHN2 52 aa2.06□□□□□ -2.08
VPS41-209ENST00000457055 KRTAP13-1Q8IUC0 172 aa2.06□□□□□ -2.08
VPS41-209ENST00000457055 A0A096LNI7 61 aa2.05□□□□□ -2.08
VPS41-209ENST00000457055 KRTAP12-4P60329 112 aa2.05□□□□□ -2.08
VPS41-209ENST00000457055 SPINK6Q6UWN8 80 aa2.05□□□□□ -2.08
VPS41-209ENST00000457055 MUC12Q9UKN1 5478 aa2.05□□□□□ -2.08
VPS41-209ENST00000457055 LINC01556Q5JQF7 62 aa2.03□□□□□ -2.08
VPS41-209ENST00000457055 FLGP20930 4061 aaPredicted RBP2□□□□□ -2.09
VPS41-209ENST00000457055 KMT2DO14686 5537 aa2□□□□□ -2.09
VPS41-209ENST00000457055 M0R2T5 61 aa2□□□□□ -2.09
VPS41-209ENST00000457055 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
VPS41-209ENST00000457055 KRTAP2-3P0C7H8 128 aa1.96□□□□□ -2.1
VPS41-209ENST00000457055 KRTAP2-4Q9BYR9 128 aa1.96□□□□□ -2.1
VPS41-209ENST00000457055 TNP1P09430 55 aa1.94□□□□□ -2.1
VPS41-209ENST00000457055 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
VPS41-209ENST00000457055 KRTAP19-6Q3LI70 58 aa1.91□□□□□ -2.1
VPS41-209ENST00000457055 MDN1Q9NU22 5596 aa1.89□□□□□ -2.11
VPS41-209ENST00000457055 KRTAP2-1Q9BYU5 128 aa1.87□□□□□ -2.11
VPS41-209ENST00000457055 MT2AP02795 61 aa1.85□□□□□ -2.11
VPS41-209ENST00000457055 MT1FP04733 61 aa1.85□□□□□ -2.11
VPS41-209ENST00000457055 C9orf92A6NGG3 77 aa1.81□□□□□ -2.12
VPS41-209ENST00000457055 KRTAP12-3P60328 96 aa1.8□□□□□ -2.12
VPS41-209ENST00000457055 SPRR2EP22531 72 aa1.77□□□□□ -2.13
VPS41-209ENST00000457055 SPRR2BP35325 72 aa1.77□□□□□ -2.13
VPS41-209ENST00000457055 SPRR2AP35326 72 aa1.77□□□□□ -2.13
VPS41-209ENST00000457055 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
VPS41-209ENST00000457055 RPS29P62273 56 aaKnown RBP1.71□□□□□ -2.14
VPS41-209ENST00000457055 SPRR2DP22532 72 aa1.7□□□□□ -2.14
VPS41-209ENST00000457055 SPRR2FQ96RM1 72 aa1.7□□□□□ -2.14
VPS41-209ENST00000457055 HMCN1Q96RW7 5635 aa1.69□□□□□ -2.14
VPS41-209ENST00000457055 AHNAK2Q8IVF2 5795 aa1.68□□□□□ -2.14
VPS41-209ENST00000457055 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
VPS41-209ENST00000457055 KRTAP8-1Q8IUC2 63 aa1.62□□□□□ -2.15
VPS41-209ENST00000457055 MT1BP07438 61 aa1.59□□□□□ -2.15
VPS41-209ENST00000457055 MT4P47944 62 aa1.57□□□□□ -2.16
VPS41-209ENST00000457055 PRM1P04553 51 aa1.53□□□□□ -2.16
VPS41-209ENST00000457055 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
VPS41-209ENST00000457055 KRTAP19-8Q3LI54 63 aa1.47□□□□□ -2.17
VPS41-209ENST00000457055 MUC5BQ9HC84 5762 aaPredicted RBP1.43□□□□□ -2.18
VPS41-209ENST00000457055 MUC5ACP98088 5654 aa1.42□□□□□ -2.18
VPS41-209ENST00000457055 SPRR2GQ9BYE4 73 aa1.4□□□□□ -2.19
VPS41-209ENST00000457055 MT1XP80297 61 aa1.38□□□□□ -2.19
VPS41-209ENST00000457055 KRTAP19-5Q3LI72 72 aa1.34□□□□□ -2.19
VPS41-209ENST00000457055 MT1AP04731 61 aa1.33□□□□□ -2.2
VPS41-209ENST00000457055 KRTAP20-2Q3LI61 65 aa1.33□□□□□ -2.2
VPS41-209ENST00000457055 KRTAP19-3Q7Z4W3 81 aa1.32□□□□□ -2.2
VPS41-209ENST00000457055 SYNE1Q8NF91 8797 aaKnown RBP1.29□□□□□ -2.2
VPS41-209ENST00000457055 MT1EP04732 61 aa1.24□□□□□ -2.21
VPS41-209ENST00000457055 KRTAP19-7Q3SYF9 63 aa1.24□□□□□ -2.21
VPS41-209ENST00000457055 KRTAP6-2Q3LI66 62 aa1.22□□□□□ -2.21
VPS41-209ENST00000457055 MT1GP13640 62 aa1.21□□□□□ -2.22
VPS41-209ENST00000457055 MT1MQ8N339 61 aa1.21□□□□□ -2.22
VPS41-209ENST00000457055 KRTAP21-1Q3LI58 79 aa1.12□□□□□ -2.23
VPS41-209ENST00000457055 MT1LQ93083 61 aa1.12□□□□□ -2.23
VPS41-209ENST00000457055 PHGR1C9JFL3 82 aa1□□□□□ -2.25
VPS41-209ENST00000457055 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
VPS41-209ENST00000457055 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 118.1 ms