RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 H3BS24 57 aa6.32□□□□□ -1.4
MSH6-207ENST00000456246 UQCR11O14957 56 aa6.31□□□□□ -1.4
MSH6-207ENST00000456246 KRTAP4-9Q9BYQ8 210 aa6.28□□□□□ -1.4
MSH6-207ENST00000456246 LCE4AQ5TA78 99 aa6.22□□□□□ -1.41
MSH6-207ENST00000456246 LCE1DQ5T752 114 aa6.18□□□□□ -1.42
MSH6-207ENST00000456246 GPR98Q8WXG9 6306 aa6.16□□□□□ -1.42
MSH6-207ENST00000456246 KRTAP12-3P60328 96 aa6.15□□□□□ -1.42
MSH6-207ENST00000456246 MIR22HGQ0VDD5 57 aa6.14□□□□□ -1.43
MSH6-207ENST00000456246 KRTAP4-3Q9BYR4 195 aa6.11□□□□□ -1.43
MSH6-207ENST00000456246 K7ERS5 55 aa6.1□□□□□ -1.43
MSH6-207ENST00000456246 MT4P47944 62 aa6.09□□□□□ -1.43
MSH6-207ENST00000456246 KRTAP25-1Q3LHN0 102 aa6.09□□□□□ -1.43
MSH6-207ENST00000456246 KRTAP5-4Q6L8H1 288 aa6.08□□□□□ -1.44
MSH6-207ENST00000456246 V9GYY9 64 aa6.07□□□□□ -1.44
MSH6-207ENST00000456246 HMCN1Q96RW7 5635 aa6.06□□□□□ -1.44
MSH6-207ENST00000456246 KRTAP4-12Q9BQ66 201 aa5.99□□□□□ -1.45
MSH6-207ENST00000456246 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
MSH6-207ENST00000456246 Q1T7F1 81 aa5.97□□□□□ -1.45
MSH6-207ENST00000456246 PSPHP1O15172 72 aa5.95□□□□□ -1.46
MSH6-207ENST00000456246 KRTAP19-4Q3LI73 84 aa5.92□□□□□ -1.46
MSH6-207ENST00000456246 KRTAP23-1A1A580 65 aa5.89□□□□□ -1.47
MSH6-207ENST00000456246 KRTAP5-5Q701N2 237 aaPredicted RBP5.82□□□□□ -1.48
MSH6-207ENST00000456246 AHNAK2Q8IVF2 5795 aa5.81□□□□□ -1.48
MSH6-207ENST00000456246 A6NED7 52 aa5.79□□□□□ -1.48
MSH6-207ENST00000456246 KRTAP5-10Q6L8G5 202 aa5.76□□□□□ -1.49
MSH6-207ENST00000456246 KRTAP9-9Q9BYP9 154 aa5.76□□□□□ -1.49
MSH6-207ENST00000456246 KRTAP9-4Q9BYQ2 154 aa5.76□□□□□ -1.49
MSH6-207ENST00000456246 KRTAP15-1Q3LI76 137 aa5.75□□□□□ -1.49
MSH6-207ENST00000456246 SPRR5A0A1B0GTR4 108 aa5.74□□□□□ -1.49
MSH6-207ENST00000456246 KRTAP20-2Q3LI61 65 aa5.73□□□□□ -1.49
MSH6-207ENST00000456246 CDC42SE1Q9NRR8 79 aa5.73□□□□□ -1.49
MSH6-207ENST00000456246 KRTAP12-4P60329 112 aa5.72□□□□□ -1.49
MSH6-207ENST00000456246 LCE3CQ5T5A8 94 aa5.66□□□□□ -1.5
MSH6-207ENST00000456246 KRTAP5-3Q6L8H2 238 aa5.63□□□□□ -1.51
MSH6-207ENST00000456246 ROMO1P60602 79 aa5.61□□□□□ -1.51
MSH6-207ENST00000456246 RPS28P62857 69 aaKnown RBP5.61□□□□□ -1.51
MSH6-207ENST00000456246 KRTAP5-7Q6L8G8 165 aa5.56□□□□□ -1.52
MSH6-207ENST00000456246 SYNE1Q8NF91 8797 aaKnown RBP5.55□□□□□ -1.52
MSH6-207ENST00000456246 MT1AP04731 61 aa5.43□□□□□ -1.54
MSH6-207ENST00000456246 PCP4P48539 62 aa5.41□□□□□ -1.54
MSH6-207ENST00000456246 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
MSH6-207ENST00000456246 KRTAP5-2Q701N4 177 aa5.32□□□□□ -1.56
MSH6-207ENST00000456246 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
MSH6-207ENST00000456246 KRTAP4-11Q9BYQ6 195 aa5.24□□□□□ -1.57
MSH6-207ENST00000456246 KRTAP4-2Q9BYR5 136 aa5.14□□□□□ -1.59
MSH6-207ENST00000456246 KRTAP6-2Q3LI66 62 aa5.13□□□□□ -1.59
MSH6-207ENST00000456246 KRTAP5-8O75690 187 aa5.04□□□□□ -1.6
MSH6-207ENST00000456246 MT3P25713 68 aa4.98□□□□□ -1.61
MSH6-207ENST00000456246 OBSCNQ5VST9 7968 aa4.96□□□□□ -1.61
MSH6-207ENST00000456246 BRK1Q8WUW1 75 aa4.89□□□□□ -1.63
MSH6-207ENST00000456246 MUC5ACP98088 5654 aa4.82□□□□□ -1.64
MSH6-207ENST00000456246 MUC5BQ9HC84 5762 aaPredicted RBP4.8□□□□□ -1.64
MSH6-207ENST00000456246 AHNAKQ09666 5890 aaKnown RBP4.78□□□□□ -1.64
MSH6-207ENST00000456246 KRTAP5-1Q6L8H4 278 aa4.76□□□□□ -1.65
MSH6-207ENST00000456246 LCE1EQ5T753 118 aa4.61□□□□□ -1.67
MSH6-207ENST00000456246 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
MSH6-207ENST00000456246 SVIPQ8NHG7 77 aa4.4□□□□□ -1.71
MSH6-207ENST00000456246 PRAC1Q96KF2 57 aa4.39□□□□□ -1.71
MSH6-207ENST00000456246 LCE1BQ5T7P3 118 aa4.27□□□□□ -1.73
MSH6-207ENST00000456246 LCE1CQ5T751 118 aa4.26□□□□□ -1.73
MSH6-207ENST00000456246 PRO0628Q9UI54 55 aa4.19□□□□□ -1.74
MSH6-207ENST00000456246 A0A0A0MQY5 61 aa4.13□□□□□ -1.75
MSH6-207ENST00000456246 LCE3DQ9BYE3 92 aa4.09□□□□□ -1.75
MSH6-207ENST00000456246 KTN1-AS1Q86SY8 53 aa4.04□□□□□ -1.76
MSH6-207ENST00000456246 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.88□□□□□ -1.79
MSH6-207ENST00000456246 KRTAP5-11Q6L8G4 156 aa3.87□□□□□ -1.79
MSH6-207ENST00000456246 LUZP6Q538Z0 58 aa3.84□□□□□ -1.79
MSH6-207ENST00000456246 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
MSH6-207ENST00000456246 LCE1FQ5T754 118 aa3.79□□□□□ -1.8
MSH6-207ENST00000456246 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
MSH6-207ENST00000456246 PHGR1C9JFL3 82 aa3.36□□□□□ -1.87
MSH6-207ENST00000456246 NDUFAF8A1L188 74 aa3.22□□□□□ -1.89
MSH6-207ENST00000456246 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
MSH6-207ENST00000456246 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
MSH6-207ENST00000456246 PRM1P04553 51 aa2.84□□□□□ -1.95
MSH6-207ENST00000456246 KRTAP21-1Q3LI58 79 aa2.59□□□□□ -1.99
MSH6-207ENST00000456246 INE1O15225 51 aa2.37□□□□□ -2.03
MSH6-207ENST00000456246 MUC16Q8WXI7 14507 aa2.15□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 246.6 ms