RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 KRTAP9-6A8MVA2 160 aa4.13□□□□□ -1.75
SMPD4-213ENST00000454468 SPRR2FQ96RM1 72 aa4.12□□□□□ -1.75
SMPD4-213ENST00000454468 MT1EP04732 61 aa4.12□□□□□ -1.75
SMPD4-213ENST00000454468 MT1LQ93083 61 aa4.12□□□□□ -1.75
SMPD4-213ENST00000454468 LOC100996750A0A140TA64 210 aa4.08□□□□□ -1.76
SMPD4-213ENST00000454468 MT1GP13640 62 aa4.08□□□□□ -1.76
SMPD4-213ENST00000454468 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
SMPD4-213ENST00000454468 SYNE2Q8WXH0 6885 aaKnown RBP4.02□□□□□ -1.77
SMPD4-213ENST00000454468 MACF1Q9UPN3 7388 aaKnown RBP4.01□□□□□ -1.77
SMPD4-213ENST00000454468 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
SMPD4-213ENST00000454468 KRTAP19-3Q7Z4W3 81 aa3.92□□□□□ -1.78
SMPD4-213ENST00000454468 MT1MQ8N339 61 aa3.89□□□□□ -1.79
SMPD4-213ENST00000454468 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
SMPD4-213ENST00000454468 LCE3BQ5TA77 95 aa3.83□□□□□ -1.8
SMPD4-213ENST00000454468 KRTAP9-2Q9BYQ4 174 aa3.83□□□□□ -1.8
SMPD4-213ENST00000454468 KRTAP2-3P0C7H8 128 aa3.77□□□□□ -1.81
SMPD4-213ENST00000454468 KRTAP2-4Q9BYR9 128 aa3.77□□□□□ -1.81
SMPD4-213ENST00000454468 KRTAP2-1Q9BYU5 128 aa3.77□□□□□ -1.81
SMPD4-213ENST00000454468 KRTAP19-4Q3LI73 84 aa3.75□□□□□ -1.81
SMPD4-213ENST00000454468 SPRR2EP22531 72 aa3.74□□□□□ -1.81
SMPD4-213ENST00000454468 SPRR2BP35325 72 aa3.74□□□□□ -1.81
SMPD4-213ENST00000454468 SPRR2AP35326 72 aa3.74□□□□□ -1.81
SMPD4-213ENST00000454468 KRTAP12-4P60329 112 aa3.73□□□□□ -1.81
SMPD4-213ENST00000454468 KRTAP4-9Q9BYQ8 210 aa3.71□□□□□ -1.82
SMPD4-213ENST00000454468 LCE5AQ5TCM9 118 aa3.68□□□□□ -1.82
SMPD4-213ENST00000454468 LCE1AQ5T7P2 110 aa3.57□□□□□ -1.84
SMPD4-213ENST00000454468 SPRR2DP22532 72 aa3.56□□□□□ -1.84
SMPD4-213ENST00000454468 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
SMPD4-213ENST00000454468 LCE3DQ9BYE3 92 aa3.45□□□□□ -1.86
SMPD4-213ENST00000454468 MT1AP04731 61 aa3.43□□□□□ -1.86
SMPD4-213ENST00000454468 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.38□□□□□ -1.87
SMPD4-213ENST00000454468 PRM1P04553 51 aa3.37□□□□□ -1.87
SMPD4-213ENST00000454468 KRTAP5-9P26371 169 aa3.36□□□□□ -1.87
SMPD4-213ENST00000454468 LCE3EQ5T5B0 92 aa3.36□□□□□ -1.87
SMPD4-213ENST00000454468 KRTAP9-6A0A140TA67 174 aa3.33□□□□□ -1.88
SMPD4-213ENST00000454468 MT4P47944 62 aa3.31□□□□□ -1.88
SMPD4-213ENST00000454468 KRTAP9-7A8MTY7 169 aa3.29□□□□□ -1.88
SMPD4-213ENST00000454468 KRTAP6-2Q3LI66 62 aa3.29□□□□□ -1.88
SMPD4-213ENST00000454468 KRTAP6-3Q3LI67 103 aa3.25□□□□□ -1.89
SMPD4-213ENST00000454468 KRTAP9-4Q9BYQ2 154 aa3.23□□□□□ -1.89
SMPD4-213ENST00000454468 MT3P25713 68 aa3.2□□□□□ -1.9
SMPD4-213ENST00000454468 KRTAP5-5Q701N2 237 aaPredicted RBP3.18□□□□□ -1.9
SMPD4-213ENST00000454468 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
SMPD4-213ENST00000454468 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
SMPD4-213ENST00000454468 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
SMPD4-213ENST00000454468 NEBP20929 6669 aa3.09□□□□□ -1.92
SMPD4-213ENST00000454468 KRTAP2-2Q9BYT5 123 aa3.06□□□□□ -1.92
SMPD4-213ENST00000454468 LCE1DQ5T752 114 aa2.98□□□□□ -1.93
SMPD4-213ENST00000454468 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
SMPD4-213ENST00000454468 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
SMPD4-213ENST00000454468 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
SMPD4-213ENST00000454468 LCE4AQ5TA78 99 aa2.84□□□□□ -1.96
SMPD4-213ENST00000454468 KRTAP5-4Q6L8H1 288 aa2.82□□□□□ -1.96
SMPD4-213ENST00000454468 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
SMPD4-213ENST00000454468 MUC5ACP98088 5654 aa2.74□□□□□ -1.97
SMPD4-213ENST00000454468 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
SMPD4-213ENST00000454468 KRTAP5-2Q701N4 177 aa2.59□□□□□ -2
SMPD4-213ENST00000454468 KRTAP5-3Q6L8H2 238 aa2.57□□□□□ -2
SMPD4-213ENST00000454468 KRTAP4-11Q9BYQ6 195 aa2.56□□□□□ -2
SMPD4-213ENST00000454468 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
SMPD4-213ENST00000454468 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
SMPD4-213ENST00000454468 MUC5BQ9HC84 5762 aaPredicted RBP2.36□□□□□ -2.03
SMPD4-213ENST00000454468 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
SMPD4-213ENST00000454468 KRTAP4-12Q9BQ66 201 aa2.33□□□□□ -2.04
SMPD4-213ENST00000454468 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
SMPD4-213ENST00000454468 KRTAP5-1Q6L8H4 278 aa2.31□□□□□ -2.04
SMPD4-213ENST00000454468 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
SMPD4-213ENST00000454468 GPR98Q8WXG9 6306 aa2.27□□□□□ -2.05
SMPD4-213ENST00000454468 KRTAP9-9Q9BYP9 154 aa2.24□□□□□ -2.05
SMPD4-213ENST00000454468 KRTAP5-8O75690 187 aa2.23□□□□□ -2.05
SMPD4-213ENST00000454468 KRTAP21-2Q3LI59 83 aa2.16□□□□□ -2.06
SMPD4-213ENST00000454468 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
SMPD4-213ENST00000454468 KRTAP5-7Q6L8G8 165 aa1.95□□□□□ -2.1
SMPD4-213ENST00000454468 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
SMPD4-213ENST00000454468 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
SMPD4-213ENST00000454468 AHNAKQ09666 5890 aaKnown RBP1.87□□□□□ -2.11
SMPD4-213ENST00000454468 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
SMPD4-213ENST00000454468 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms