RNA–Protein interactions for RNA: ENST00000450385.5

SGCE-208, Transcript of sarcoglycan epsilon, human

TSL 3

Gene SGCE, Length 815 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SGCE-208	ENST00000450385	PP632	Q6XCG6	107 aa		5.84	□□□□□ -1.47
SGCE-208	ENST00000450385	KRTAP19-5	Q3LI72	72 aa		5.82	□□□□□ -1.48
SGCE-208	ENST00000450385	TNP1	P09430	55 aa		5.81	□□□□□ -1.48
SGCE-208	ENST00000450385	GPR98	Q8WXG9	6306 aa		5.8	□□□□□ -1.48
SGCE-208	ENST00000450385		A8MU10	97 aa		5.78	□□□□□ -1.48
SGCE-208	ENST00000450385	CCDC179	H3BU77	68 aa		5.75	□□□□□ -1.49
SGCE-208	ENST00000450385	LINC01558	Q9Y6Z2	57 aa		5.75	□□□□□ -1.49
SGCE-208	ENST00000450385	LCE1D	Q5T752	114 aa		5.71	□□□□□ -1.5
SGCE-208	ENST00000450385	C10orf95	Q9H7T3	257 aa		5.71	□□□□□ -1.5
SGCE-208	ENST00000450385	MT1L	Q93083	61 aa		5.69	□□□□□ -1.5
SGCE-208	ENST00000450385	MT1M	Q8N339	61 aa		5.67	□□□□□ -1.5
SGCE-208	ENST00000450385	UQCR11	O14957	56 aa		5.66	□□□□□ -1.5
SGCE-208	ENST00000450385	TMEM258	P61165	79 aa		5.66	□□□□□ -1.5
SGCE-208	ENST00000450385	LCE3A	Q5TA76	89 aa		5.66	□□□□□ -1.5
SGCE-208	ENST00000450385	KRTAP4-9	Q9BYQ8	210 aa		5.62	□□□□□ -1.51
SGCE-208	ENST00000450385	PRAC1	Q96KF2	57 aa		5.61	□□□□□ -1.51
SGCE-208	ENST00000450385	KRTAP12-3	P60328	96 aa		5.52	□□□□□ -1.53
SGCE-208	ENST00000450385	KRTAP5-4	Q6L8H1	288 aa		5.49	□□□□□ -1.53
SGCE-208	ENST00000450385	KRTAP25-1	Q3LHN0	102 aa		5.48	□□□□□ -1.53
SGCE-208	ENST00000450385		K7ERS5	55 aa		5.47	□□□□□ -1.53
SGCE-208	ENST00000450385	MIR22HG	Q0VDD5	57 aa		5.47	□□□□□ -1.53
SGCE-208	ENST00000450385		V9GYY9	64 aa		5.46	□□□□□ -1.54
SGCE-208	ENST00000450385	HMCN1	Q96RW7	5635 aa		5.45	□□□□□ -1.54
SGCE-208	ENST00000450385	MT4	P47944	62 aa		5.44	□□□□□ -1.54
SGCE-208	ENST00000450385	KRTAP4-3	Q9BYR4	195 aa		5.43	□□□□□ -1.54
SGCE-208	ENST00000450385	KRTAP4-7	Q9BYR0	210 aa		5.42	□□□□□ -1.54
SGCE-208	ENST00000450385	KRTAP4-11	Q9BYQ6	195 aa		5.39	□□□□□ -1.55
SGCE-208	ENST00000450385		Q1T7F1	81 aa		5.35	□□□□□ -1.55
SGCE-208	ENST00000450385	PSPHP1	O15172	72 aa		5.26	□□□□□ -1.57
SGCE-208	ENST00000450385	AHNAK2	Q8IVF2	5795 aa		5.24	□□□□□ -1.57
SGCE-208	ENST00000450385	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.23	□□□□□ -1.57
SGCE-208	ENST00000450385	SPRR5	A0A1B0GTR4	108 aa		5.2	□□□□□ -1.58
SGCE-208	ENST00000450385	KRTAP5-10	Q6L8G5	202 aa		5.2	□□□□□ -1.58
SGCE-208	ENST00000450385	KRTAP12-4	P60329	112 aa		5.18	□□□□□ -1.58
SGCE-208	ENST00000450385	KRTAP4-2	Q9BYR5	136 aa		5.18	□□□□□ -1.58
SGCE-208	ENST00000450385		A6NED7	52 aa		5.14	□□□□□ -1.59
SGCE-208	ENST00000450385	KRTAP20-2	Q3LI61	65 aa		5.14	□□□□□ -1.59
SGCE-208	ENST00000450385	CDC42SE1	Q9NRR8	79 aa		5.11	□□□□□ -1.59
SGCE-208	ENST00000450385	NDUFAF8	A1L188	74 aa		5.09	□□□□□ -1.59
SGCE-208	ENST00000450385	LCE3C	Q5T5A8	94 aa		5.08	□□□□□ -1.6
SGCE-208	ENST00000450385	RPS28	P62857	69 aa	Known RBP	5.06	□□□□□ -1.6
SGCE-208	ENST00000450385	KRTAP5-3	Q6L8H2	238 aa		5.06	□□□□□ -1.6
SGCE-208	ENST00000450385	KRTAP5-7	Q6L8G8	165 aa		5.04	□□□□□ -1.6
SGCE-208	ENST00000450385	ROMO1	P60602	79 aa		5.01	□□□□□ -1.61
SGCE-208	ENST00000450385	SYNE1	Q8NF91	8797 aa	Known RBP	4.94	□□□□□ -1.62
SGCE-208	ENST00000450385	MT3	P25713	68 aa		4.91	□□□□□ -1.62
SGCE-208	ENST00000450385	MT1A	P04731	61 aa		4.86	□□□□□ -1.63
SGCE-208	ENST00000450385	KRTAP5-2	Q701N4	177 aa		4.8	□□□□□ -1.64
SGCE-208	ENST00000450385	KRTAP6-1	Q3LI64	71 aa		4.78	□□□□□ -1.64
SGCE-208	ENST00000450385	KRTAP9-6	A8MVA2	160 aa		4.7	□□□□□ -1.66
SGCE-208	ENST00000450385	LCE1F	Q5T754	118 aa		4.62	□□□□□ -1.67
SGCE-208	ENST00000450385	KRTAP6-2	Q3LI66	62 aa		4.59	□□□□□ -1.67
SGCE-208	ENST00000450385	KRTAP5-8	O75690	187 aa		4.54	□□□□□ -1.68
SGCE-208	ENST00000450385	OBSCN	Q5VST9	7968 aa		4.45	□□□□□ -1.7
SGCE-208	ENST00000450385	AHNAK	Q09666	5890 aa	Known RBP	4.44	□□□□□ -1.7
SGCE-208	ENST00000450385	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.34	□□□□□ -1.71
SGCE-208	ENST00000450385	MUC5AC	P98088	5654 aa		4.32	□□□□□ -1.72
SGCE-208	ENST00000450385	BRK1	Q8WUW1	75 aa		4.3	□□□□□ -1.72
SGCE-208	ENST00000450385	KRTAP5-1	Q6L8H4	278 aa		4.29	□□□□□ -1.72
SGCE-208	ENST00000450385	LCE1E	Q5T753	118 aa		4.19	□□□□□ -1.74
SGCE-208	ENST00000450385	PMAIP1	Q13794	54 aa		4.09	□□□□□ -1.75
SGCE-208	ENST00000450385	PRO0628	Q9UI54	55 aa		3.95	□□□□□ -1.78
SGCE-208	ENST00000450385	LCE3E	Q5T5B0	92 aa		3.91	□□□□□ -1.78
SGCE-208	ENST00000450385	LUZP6	Q538Z0	58 aa		3.89	□□□□□ -1.79
SGCE-208	ENST00000450385	LCE1C	Q5T751	118 aa		3.87	□□□□□ -1.79
SGCE-208	ENST00000450385	LCE1B	Q5T7P3	118 aa		3.87	□□□□□ -1.79
SGCE-208	ENST00000450385	LCE3D	Q9BYE3	92 aa		3.68	□□□□□ -1.82
SGCE-208	ENST00000450385	KRTAP5-11	Q6L8G4	156 aa		3.65	□□□□□ -1.83
SGCE-208	ENST00000450385	KTN1-AS1	Q86SY8	53 aa		3.56	□□□□□ -1.84
SGCE-208	ENST00000450385	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.53	□□□□□ -1.84
SGCE-208	ENST00000450385	KRTAP21-2	Q3LI59	83 aa		3.18	□□□□□ -1.9
SGCE-208	ENST00000450385	PHGR1	C9JFL3	82 aa		3.01	□□□□□ -1.93
SGCE-208	ENST00000450385	KRTAP4-4	Q9BYR3	166 aa		2.81	□□□□□ -1.96
SGCE-208	ENST00000450385	MUC19	Q7Z5P9	8384 aa		2.73	□□□□□ -1.97
SGCE-208	ENST00000450385	PRM1	P04553	51 aa		2.5	□□□□□ -2.01
SGCE-208	ENST00000450385	KRTAP21-1	Q3LI58	79 aa		2.35	□□□□□ -2.03
SGCE-208	ENST00000450385	INE1	O15225	51 aa		2.2	□□□□□ -2.06
SGCE-208	ENST00000450385	MUC16	Q8WXI7	14507 aa		1.98	□□□□□ -2.09

Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms