RNA–Protein interactions for RNA: ENST00000448223.6

SMC6-207, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,233 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-207ENST00000448223 SPRR2FQ96RM1 72 aa3.08□□□□□ -1.92
SMC6-207ENST00000448223 MT1GP13640 62 aa3.06□□□□□ -1.92
SMC6-207ENST00000448223 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
SMC6-207ENST00000448223 PRM1P04553 51 aa3.02□□□□□ -1.93
SMC6-207ENST00000448223 MT3P25713 68 aa3.01□□□□□ -1.93
SMC6-207ENST00000448223 KRTAP4-3Q9BYR4 195 aa3.01□□□□□ -1.93
SMC6-207ENST00000448223 MUC12Q9UKN1 5478 aa3.01□□□□□ -1.93
SMC6-207ENST00000448223 LOC100996750A0A140TA64 210 aa3.01□□□□□ -1.93
SMC6-207ENST00000448223 KRTAP19-7Q3SYF9 63 aa2.97□□□□□ -1.93
SMC6-207ENST00000448223 SYNE2Q8WXH0 6885 aaKnown RBP2.95□□□□□ -1.94
SMC6-207ENST00000448223 MT1LQ93083 61 aa2.95□□□□□ -1.94
SMC6-207ENST00000448223 MT1EP04732 61 aa2.93□□□□□ -1.94
SMC6-207ENST00000448223 KRTAP4-6Q9BYQ5 205 aa2.91□□□□□ -1.94
SMC6-207ENST00000448223 LCE2AQ5TA79 106 aaPredicted RBP2.9□□□□□ -1.95
SMC6-207ENST00000448223 KRTAP2-3P0C7H8 128 aa2.89□□□□□ -1.95
SMC6-207ENST00000448223 KRTAP2-4Q9BYR9 128 aa2.89□□□□□ -1.95
SMC6-207ENST00000448223 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
SMC6-207ENST00000448223 SSPOA2VEC9 5147 aa2.89□□□□□ -1.95
SMC6-207ENST00000448223 KRTAP4-9Q9BYQ8 210 aa2.82□□□□□ -1.96
SMC6-207ENST00000448223 KRTAP19-3Q7Z4W3 81 aa2.78□□□□□ -1.96
SMC6-207ENST00000448223 SPRR2EP22531 72 aa2.77□□□□□ -1.97
SMC6-207ENST00000448223 SPRR2BP35325 72 aa2.77□□□□□ -1.97
SMC6-207ENST00000448223 SPRR2AP35326 72 aa2.77□□□□□ -1.97
SMC6-207ENST00000448223 MT1MQ8N339 61 aa2.77□□□□□ -1.97
SMC6-207ENST00000448223 MACF1Q9UPN3 7388 aaKnown RBP2.72□□□□□ -1.97
SMC6-207ENST00000448223 KRTAP19-6Q3LI70 58 aa2.71□□□□□ -1.98
SMC6-207ENST00000448223 SPRR2DP22532 72 aa2.68□□□□□ -1.98
SMC6-207ENST00000448223 MDN1Q9NU22 5596 aa2.62□□□□□ -1.99
SMC6-207ENST00000448223 LCE1BQ5T7P3 118 aa2.59□□□□□ -2
SMC6-207ENST00000448223 KRTAP6-1Q3LI64 71 aa2.58□□□□□ -2
SMC6-207ENST00000448223 KRTAP6-2Q3LI66 62 aa2.56□□□□□ -2
SMC6-207ENST00000448223 LCE1DQ5T752 114 aa2.55□□□□□ -2
SMC6-207ENST00000448223 LCE5AQ5TCM9 118 aa2.54□□□□□ -2
SMC6-207ENST00000448223 KRTAP9-7A8MTY7 169 aa2.53□□□□□ -2
SMC6-207ENST00000448223 MT1AP04731 61 aa2.53□□□□□ -2.01
SMC6-207ENST00000448223 KRTAP9-2Q9BYQ4 174 aa2.46□□□□□ -2.02
SMC6-207ENST00000448223 KRTAP2-2Q9BYT5 123 aa2.43□□□□□ -2.02
SMC6-207ENST00000448223 LCE1AQ5T7P2 110 aa2.42□□□□□ -2.02
SMC6-207ENST00000448223 MT4P47944 62 aa2.39□□□□□ -2.03
SMC6-207ENST00000448223 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.35□□□□□ -2.03
SMC6-207ENST00000448223 KRTAP5-5Q701N2 237 aaPredicted RBP2.32□□□□□ -2.04
SMC6-207ENST00000448223 KRTAP9-6A0A140TA67 174 aa2.32□□□□□ -2.04
SMC6-207ENST00000448223 KRTAP9-4Q9BYQ2 154 aa2.31□□□□□ -2.04
SMC6-207ENST00000448223 LCE4AQ5TA78 99 aa2.28□□□□□ -2.04
SMC6-207ENST00000448223 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
SMC6-207ENST00000448223 LCE1EQ5T753 118 aa2.25□□□□□ -2.05
SMC6-207ENST00000448223 KRTAP4-2Q9BYR5 136 aa2.24□□□□□ -2.05
SMC6-207ENST00000448223 KRTAP5-3Q6L8H2 238 aa2.24□□□□□ -2.05
SMC6-207ENST00000448223 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
SMC6-207ENST00000448223 KRTAP9-9Q9BYP9 154 aa2.21□□□□□ -2.06
SMC6-207ENST00000448223 KRTAP5-9P26371 169 aa2.2□□□□□ -2.06
SMC6-207ENST00000448223 KRTAP4-11Q9BYQ6 195 aa2.19□□□□□ -2.06
SMC6-207ENST00000448223 KRTAP20-1Q3LI63 56 aa2.19□□□□□ -2.06
SMC6-207ENST00000448223 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
SMC6-207ENST00000448223 LCE1FQ5T754 118 aa2.17□□□□□ -2.06
SMC6-207ENST00000448223 KRTAP6-3Q3LI67 103 aa2.15□□□□□ -2.07
SMC6-207ENST00000448223 GPR98Q8WXG9 6306 aa2.14□□□□□ -2.07
SMC6-207ENST00000448223 NEBP20929 6669 aa2.07□□□□□ -2.08
SMC6-207ENST00000448223 MUC5ACP98088 5654 aa2.02□□□□□ -2.09
SMC6-207ENST00000448223 KRTAP5-6Q6L8G9 129 aaPredicted RBP2□□□□□ -2.09
SMC6-207ENST00000448223 KRTAP20-2Q3LI61 65 aa1.95□□□□□ -2.1
SMC6-207ENST00000448223 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
SMC6-207ENST00000448223 KRTAP5-4Q6L8H1 288 aa1.89□□□□□ -2.11
SMC6-207ENST00000448223 KRTAP5-2Q701N4 177 aa1.86□□□□□ -2.11
SMC6-207ENST00000448223 KRTAP4-4Q9BYR3 166 aa1.83□□□□□ -2.12
SMC6-207ENST00000448223 KRTAP5-10Q6L8G5 202 aa1.72□□□□□ -2.13
SMC6-207ENST00000448223 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.14
SMC6-207ENST00000448223 AHNAK2Q8IVF2 5795 aa1.64□□□□□ -2.15
SMC6-207ENST00000448223 KRTAP5-1Q6L8H4 278 aa1.58□□□□□ -2.16
SMC6-207ENST00000448223 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
SMC6-207ENST00000448223 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
SMC6-207ENST00000448223 KRTAP21-1Q3LI58 79 aa1.41□□□□□ -2.18
SMC6-207ENST00000448223 KRTAP5-11Q6L8G4 156 aa1.37□□□□□ -2.19
SMC6-207ENST00000448223 AHNAKQ09666 5890 aaKnown RBP1.32□□□□□ -2.2
SMC6-207ENST00000448223 PHGR1C9JFL3 82 aa1.28□□□□□ -2.2
SMC6-207ENST00000448223 KRTAP5-7Q6L8G8 165 aa1.28□□□□□ -2.2
SMC6-207ENST00000448223 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 72.5 ms