RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RYR1P21817 5038 aa1.6□□□□□ -2.15
VPS29-202ENST00000447578 KRTAP19-2Q3LHN2 52 aa1.6□□□□□ -2.15
VPS29-202ENST00000447578 DMBT1Q9UGM3 2413 aaPredicted RBP1.6□□□□□ -2.15
VPS29-202ENST00000447578 KMT2CQ8NEZ4 4911 aaKnown RBP1.59□□□□□ -2.15
VPS29-202ENST00000447578 KIAA1109Q2LD37 5005 aa1.58□□□□□ -2.16
VPS29-202ENST00000447578 RYR3Q15413 4870 aa1.56□□□□□ -2.16
VPS29-202ENST00000447578 LPAP08519 4548 aa1.56□□□□□ -2.16
VPS29-202ENST00000447578 MYCBP2O75592 4640 aa1.56□□□□□ -2.16
VPS29-202ENST00000447578 INE1O15225 51 aa1.55□□□□□ -2.16
VPS29-202ENST00000447578 MUC17Q685J3 4493 aa1.55□□□□□ -2.16
VPS29-202ENST00000447578 EPPK1P58107 5090 aaKnown RBP1.54□□□□□ -2.16
VPS29-202ENST00000447578 M0R2T5 61 aa1.52□□□□□ -2.17
VPS29-202ENST00000447578 LRP2P98164 4655 aa1.51□□□□□ -2.17
VPS29-202ENST00000447578 TNP1P09430 55 aa1.49□□□□□ -2.17
VPS29-202ENST00000447578 MT1HP80294 61 aa1.49□□□□□ -2.17
VPS29-202ENST00000447578 PLAC4Q8WY50 150 aa1.49□□□□□ -2.17
VPS29-202ENST00000447578 SPRR2GQ9BYE4 73 aa1.48□□□□□ -2.17
VPS29-202ENST00000447578 ABCA13Q86UQ4 5058 aa1.48□□□□□ -2.17
VPS29-202ENST00000447578 MT2AP02795 61 aa1.46□□□□□ -2.18
VPS29-202ENST00000447578 MT1FP04733 61 aa1.46□□□□□ -2.18
VPS29-202ENST00000447578 HERC2O95714 4834 aa1.45□□□□□ -2.18
VPS29-202ENST00000447578 BIRC6Q9NR09 4857 aa1.44□□□□□ -2.18
VPS29-202ENST00000447578 HERC1Q15751 4861 aa1.43□□□□□ -2.18
VPS29-202ENST00000447578 KRTAP19-8Q3LI54 63 aa1.42□□□□□ -2.18
VPS29-202ENST00000447578 MT1BP07438 61 aa1.41□□□□□ -2.18
VPS29-202ENST00000447578 FLGP20930 4061 aaPredicted RBP1.39□□□□□ -2.19
VPS29-202ENST00000447578 MT1XP80297 61 aa1.39□□□□□ -2.19
VPS29-202ENST00000447578 PCLOQ9Y6V0 5065 aa1.37□□□□□ -2.19
VPS29-202ENST00000447578 HMCN2Q8NDA2 5059 aa1.36□□□□□ -2.19
VPS29-202ENST00000447578 KRTAP8-1Q8IUC2 63 aa1.35□□□□□ -2.19
VPS29-202ENST00000447578 MUC2Q02817 5179 aa1.34□□□□□ -2.19
VPS29-202ENST00000447578 RNF213Q63HN8 5207 aa1.31□□□□□ -2.2
VPS29-202ENST00000447578 KRTAP19-5Q3LI72 72 aa1.3□□□□□ -2.2
VPS29-202ENST00000447578 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
VPS29-202ENST00000447578 UBR4Q5T4S7 5183 aa1.28□□□□□ -2.2
VPS29-202ENST00000447578 KRTAP19-7Q3SYF9 63 aa1.23□□□□□ -2.21
VPS29-202ENST00000447578 MT1EP04732 61 aa1.21□□□□□ -2.22
VPS29-202ENST00000447578 KRTAP19-6Q3LI70 58 aa1.21□□□□□ -2.22
VPS29-202ENST00000447578 MT1LQ93083 61 aa1.2□□□□□ -2.22
VPS29-202ENST00000447578 AHNAK2Q8IVF2 5795 aa1.18□□□□□ -2.22
VPS29-202ENST00000447578 KRTAP2-3P0C7H8 128 aa1.14□□□□□ -2.23
VPS29-202ENST00000447578 KRTAP19-3Q7Z4W3 81 aa1.14□□□□□ -2.23
VPS29-202ENST00000447578 KRTAP2-4Q9BYR9 128 aa1.14□□□□□ -2.23
VPS29-202ENST00000447578 KRTAP2-1Q9BYU5 128 aa1.14□□□□□ -2.23
VPS29-202ENST00000447578 MT1GP13640 62 aa1.13□□□□□ -2.23
VPS29-202ENST00000447578 MT1MQ8N339 61 aa1.13□□□□□ -2.23
VPS29-202ENST00000447578 USH2AO75445 5202 aa1.13□□□□□ -2.23
VPS29-202ENST00000447578 SPRR2FQ96RM1 72 aa1.11□□□□□ -2.23
VPS29-202ENST00000447578 KMT2DO14686 5537 aa1.1□□□□□ -2.23
VPS29-202ENST00000447578 FSIP2Q5CZC0 6907 aa1.07□□□□□ -2.24
VPS29-202ENST00000447578 SSPOA2VEC9 5147 aa1.06□□□□□ -2.24
VPS29-202ENST00000447578 MACF1Q9UPN3 7388 aaKnown RBP1.04□□□□□ -2.24
VPS29-202ENST00000447578 SPRR2EP22531 72 aa1.03□□□□□ -2.24
VPS29-202ENST00000447578 SPRR2BP35325 72 aa1.03□□□□□ -2.24
VPS29-202ENST00000447578 SPRR2AP35326 72 aa1.03□□□□□ -2.24
VPS29-202ENST00000447578 MT1AP04731 61 aa1.02□□□□□ -2.25
VPS29-202ENST00000447578 KRTAP6-1Q3LI64 71 aa1.02□□□□□ -2.25
VPS29-202ENST00000447578 SYNE2Q8WXH0 6885 aaKnown RBP1.01□□□□□ -2.25
VPS29-202ENST00000447578 SPRR2DP22532 72 aa0.99□□□□□ -2.25
VPS29-202ENST00000447578 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
VPS29-202ENST00000447578 GPR98Q8WXG9 6306 aa0.97□□□□□ -2.25
VPS29-202ENST00000447578 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
VPS29-202ENST00000447578 SYNE1Q8NF91 8797 aaKnown RBP0.94□□□□□ -2.26
VPS29-202ENST00000447578 DSTQ03001 7570 aaKnown RBP0.94□□□□□ -2.26
VPS29-202ENST00000447578 MUC12Q9UKN1 5478 aa0.94□□□□□ -2.26
VPS29-202ENST00000447578 KRTAP6-2Q3LI66 62 aa0.92□□□□□ -2.26
VPS29-202ENST00000447578 NEBP20929 6669 aa0.9□□□□□ -2.27
VPS29-202ENST00000447578 PRM1P04553 51 aa0.9□□□□□ -2.27
VPS29-202ENST00000447578 MT4P47944 62 aa0.87□□□□□ -2.27
VPS29-202ENST00000447578 KRTAP20-2Q3LI61 65 aa0.84□□□□□ -2.27
VPS29-202ENST00000447578 MDN1Q9NU22 5596 aa0.81□□□□□ -2.28
VPS29-202ENST00000447578 KRTAP20-1Q3LI63 56 aa0.81□□□□□ -2.28
VPS29-202ENST00000447578 AHNAKQ09666 5890 aaKnown RBP0.74□□□□□ -2.29
VPS29-202ENST00000447578 MUC5BQ9HC84 5762 aaPredicted RBP0.69□□□□□ -2.3
VPS29-202ENST00000447578 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
VPS29-202ENST00000447578 KRTAP21-1Q3LI58 79 aa0.57□□□□□ -2.32
VPS29-202ENST00000447578 PHGR1C9JFL3 82 aa0.52□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 587 ms