RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 LCE2DQ5TA82 110 aaPredicted RBP6.13□□□□□ -1.43
SDCBP-204ENST00000447182 KRTAP4-3Q9BYR4 195 aa6.13□□□□□ -1.43
SDCBP-204ENST00000447182 MT1MQ8N339 61 aa6.11□□□□□ -1.43
SDCBP-204ENST00000447182 MT1GP13640 62 aa6.1□□□□□ -1.43
SDCBP-204ENST00000447182 KRTAP19-3Q7Z4W3 81 aa6.1□□□□□ -1.43
SDCBP-204ENST00000447182 FCGBPQ9Y6R7 5405 aaPredicted RBP5.98□□□□□ -1.45
SDCBP-204ENST00000447182 MUC12Q9UKN1 5478 aa5.93□□□□□ -1.46
SDCBP-204ENST00000447182 FSIP2Q5CZC0 6907 aa5.88□□□□□ -1.47
SDCBP-204ENST00000447182 LCE5AQ5TCM9 118 aa5.88□□□□□ -1.47
SDCBP-204ENST00000447182 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
SDCBP-204ENST00000447182 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
SDCBP-204ENST00000447182 SPRR2FQ96RM1 72 aa5.75□□□□□ -1.49
SDCBP-204ENST00000447182 KRTAP9-6A0A140TA67 174 aa5.68□□□□□ -1.5
SDCBP-204ENST00000447182 LCE3BQ5TA77 95 aa5.66□□□□□ -1.5
SDCBP-204ENST00000447182 MT1AP04731 61 aa5.65□□□□□ -1.51
SDCBP-204ENST00000447182 DSTQ03001 7570 aaKnown RBP5.62□□□□□ -1.51
SDCBP-204ENST00000447182 KRTAP6-1Q3LI64 71 aa5.56□□□□□ -1.52
SDCBP-204ENST00000447182 KRTAP4-9Q9BYQ8 210 aa5.54□□□□□ -1.52
SDCBP-204ENST00000447182 MACF1Q9UPN3 7388 aaKnown RBP5.45□□□□□ -1.54
SDCBP-204ENST00000447182 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
SDCBP-204ENST00000447182 SYNE1Q8NF91 8797 aaKnown RBP5.42□□□□□ -1.54
SDCBP-204ENST00000447182 KRTAP5-5Q701N2 237 aaPredicted RBP5.42□□□□□ -1.54
SDCBP-204ENST00000447182 KRTAP9-2Q9BYQ4 174 aa5.41□□□□□ -1.54
SDCBP-204ENST00000447182 LCE3EQ5T5B0 92 aa5.39□□□□□ -1.55
SDCBP-204ENST00000447182 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
SDCBP-204ENST00000447182 KRTAP5-9P26371 169 aa5.34□□□□□ -1.55
SDCBP-204ENST00000447182 MDN1Q9NU22 5596 aa5.29□□□□□ -1.56
SDCBP-204ENST00000447182 KRTAP9-7A8MTY7 169 aa5.21□□□□□ -1.57
SDCBP-204ENST00000447182 SYNE2Q8WXH0 6885 aaKnown RBP5.19□□□□□ -1.58
SDCBP-204ENST00000447182 KRTAP9-4Q9BYQ2 154 aa5.19□□□□□ -1.58
SDCBP-204ENST00000447182 PRM1P04553 51 aa5.18□□□□□ -1.58
SDCBP-204ENST00000447182 SPRR2EP22531 72 aa5.17□□□□□ -1.58
SDCBP-204ENST00000447182 SPRR2BP35325 72 aa5.17□□□□□ -1.58
SDCBP-204ENST00000447182 SPRR2AP35326 72 aa5.17□□□□□ -1.58
SDCBP-204ENST00000447182 KRTAP6-2Q3LI66 62 aa5.01□□□□□ -1.61
SDCBP-204ENST00000447182 MT3P25713 68 aa4.96□□□□□ -1.62
SDCBP-204ENST00000447182 SPRR2DP22532 72 aa4.95□□□□□ -1.62
SDCBP-204ENST00000447182 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
SDCBP-204ENST00000447182 KRTAP4-6Q9BYQ5 205 aa4.75□□□□□ -1.65
SDCBP-204ENST00000447182 KRTAP5-4Q6L8H1 288 aa4.69□□□□□ -1.66
SDCBP-204ENST00000447182 KRTAP2-2Q9BYT5 123 aa4.61□□□□□ -1.67
SDCBP-204ENST00000447182 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.6□□□□□ -1.67
SDCBP-204ENST00000447182 OBSCNQ5VST9 7968 aa4.59□□□□□ -1.67
SDCBP-204ENST00000447182 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
SDCBP-204ENST00000447182 GPR98Q8WXG9 6306 aa4.4□□□□□ -1.7
SDCBP-204ENST00000447182 KRTAP20-2Q3LI61 65 aa4.37□□□□□ -1.71
SDCBP-204ENST00000447182 LCE4AQ5TA78 99 aa4.34□□□□□ -1.71
SDCBP-204ENST00000447182 MT4P47944 62 aa4.33□□□□□ -1.72
SDCBP-204ENST00000447182 NEBP20929 6669 aa4.3□□□□□ -1.72
SDCBP-204ENST00000447182 KRTAP20-1Q3LI63 56 aa4.25□□□□□ -1.73
SDCBP-204ENST00000447182 KRTAP5-3Q6L8H2 238 aa4.17□□□□□ -1.74
SDCBP-204ENST00000447182 MUC5ACP98088 5654 aa4.15□□□□□ -1.74
SDCBP-204ENST00000447182 HMCN1Q96RW7 5635 aa4.12□□□□□ -1.75
SDCBP-204ENST00000447182 LCE1DQ5T752 114 aa4.06□□□□□ -1.76
SDCBP-204ENST00000447182 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
SDCBP-204ENST00000447182 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
SDCBP-204ENST00000447182 KRTAP4-12Q9BQ66 201 aa3.95□□□□□ -1.78
SDCBP-204ENST00000447182 KRTAP5-1Q6L8H4 278 aa3.94□□□□□ -1.78
SDCBP-204ENST00000447182 KRTAP9-9Q9BYP9 154 aa3.94□□□□□ -1.78
SDCBP-204ENST00000447182 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
SDCBP-204ENST00000447182 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
SDCBP-204ENST00000447182 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
SDCBP-204ENST00000447182 KRTAP4-2Q9BYR5 136 aa3.8□□□□□ -1.8
SDCBP-204ENST00000447182 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.82
SDCBP-204ENST00000447182 KRTAP21-2Q3LI59 83 aa3.61□□□□□ -1.83
SDCBP-204ENST00000447182 AHNAK2Q8IVF2 5795 aa3.57□□□□□ -1.84
SDCBP-204ENST00000447182 KRTAP5-7Q6L8G8 165 aa3.46□□□□□ -1.86
SDCBP-204ENST00000447182 KRTAP5-8O75690 187 aa3.44□□□□□ -1.86
SDCBP-204ENST00000447182 AHNAKQ09666 5890 aaKnown RBP3.4□□□□□ -1.87
SDCBP-204ENST00000447182 MUC5BQ9HC84 5762 aaPredicted RBP3.36□□□□□ -1.87
SDCBP-204ENST00000447182 KRTAP21-1Q3LI58 79 aa3.33□□□□□ -1.88
SDCBP-204ENST00000447182 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
SDCBP-204ENST00000447182 KRTAP4-4Q9BYR3 166 aa3.2□□□□□ -1.9
SDCBP-204ENST00000447182 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
SDCBP-204ENST00000447182 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
SDCBP-204ENST00000447182 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
SDCBP-204ENST00000447182 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms