RNA–Protein interactions for RNA: ENST00000442625.2

MCF2L-218, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-218ENST00000442625 KRTAP4-7Q9BYR0 210 aa5.09□□□□□ -1.59
MCF2L-218ENST00000442625 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.03□□□□□ -1.6
MCF2L-218ENST00000442625 KRTAP9-2Q9BYQ4 174 aa5.03□□□□□ -1.6
MCF2L-218ENST00000442625 KRTAP19-7Q3SYF9 63 aa4.95□□□□□ -1.62
MCF2L-218ENST00000442625 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
MCF2L-218ENST00000442625 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
MCF2L-218ENST00000442625 KRTAP2-3P0C7H8 128 aa4.86□□□□□ -1.63
MCF2L-218ENST00000442625 KRTAP2-4Q9BYR9 128 aa4.86□□□□□ -1.63
MCF2L-218ENST00000442625 KRTAP2-1Q9BYU5 128 aa4.86□□□□□ -1.63
MCF2L-218ENST00000442625 FSIP2Q5CZC0 6907 aa4.84□□□□□ -1.63
MCF2L-218ENST00000442625 MT1LQ93083 61 aa4.8□□□□□ -1.64
MCF2L-218ENST00000442625 MT1EP04732 61 aa4.78□□□□□ -1.64
MCF2L-218ENST00000442625 SSPOA2VEC9 5147 aa4.76□□□□□ -1.65
MCF2L-218ENST00000442625 LCE5AQ5TCM9 118 aa4.71□□□□□ -1.66
MCF2L-218ENST00000442625 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.66
MCF2L-218ENST00000442625 MUC12Q9UKN1 5478 aa4.67□□□□□ -1.66
MCF2L-218ENST00000442625 DSTQ03001 7570 aaKnown RBP4.65□□□□□ -1.67
MCF2L-218ENST00000442625 FCGBPQ9Y6R7 5405 aaPredicted RBP4.64□□□□□ -1.67
MCF2L-218ENST00000442625 CRCT1Q9UGL9 99 aa4.63□□□□□ -1.67
MCF2L-218ENST00000442625 MT1GP13640 62 aa4.6□□□□□ -1.67
MCF2L-218ENST00000442625 LCE1AQ5T7P2 110 aa4.59□□□□□ -1.67
MCF2L-218ENST00000442625 KRTAP6-3Q3LI67 103 aa4.55□□□□□ -1.68
MCF2L-218ENST00000442625 KRTAP19-6Q3LI70 58 aa4.55□□□□□ -1.68
MCF2L-218ENST00000442625 LCE1DQ5T752 114 aa4.52□□□□□ -1.69
MCF2L-218ENST00000442625 KRTAP12-4P60329 112 aa4.46□□□□□ -1.69
MCF2L-218ENST00000442625 MT1MQ8N339 61 aa4.46□□□□□ -1.69
MCF2L-218ENST00000442625 KRTAP19-3Q7Z4W3 81 aa4.44□□□□□ -1.7
MCF2L-218ENST00000442625 LCE1EQ5T753 118 aa4.43□□□□□ -1.7
MCF2L-218ENST00000442625 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
MCF2L-218ENST00000442625 KRTAP4-9Q9BYQ8 210 aa4.37□□□□□ -1.71
MCF2L-218ENST00000442625 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
MCF2L-218ENST00000442625 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
MCF2L-218ENST00000442625 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
MCF2L-218ENST00000442625 SYNE2Q8WXH0 6885 aaKnown RBP4.22□□□□□ -1.73
MCF2L-218ENST00000442625 MACF1Q9UPN3 7388 aaKnown RBP4.2□□□□□ -1.74
MCF2L-218ENST00000442625 OBSCNQ5VST9 7968 aa4.16□□□□□ -1.74
MCF2L-218ENST00000442625 KRTAP4-2Q9BYR5 136 aa4.16□□□□□ -1.74
MCF2L-218ENST00000442625 MDN1Q9NU22 5596 aa4.14□□□□□ -1.75
MCF2L-218ENST00000442625 KRTAP6-1Q3LI64 71 aa4.12□□□□□ -1.75
MCF2L-218ENST00000442625 LCE3DQ9BYE3 92 aa4.02□□□□□ -1.77
MCF2L-218ENST00000442625 MT1AP04731 61 aa4□□□□□ -1.77
MCF2L-218ENST00000442625 KRTAP5-5Q701N2 237 aaPredicted RBP4□□□□□ -1.77
MCF2L-218ENST00000442625 PRM1P04553 51 aa4□□□□□ -1.77
MCF2L-218ENST00000442625 LCE3EQ5T5B0 92 aa3.97□□□□□ -1.77
MCF2L-218ENST00000442625 KRTAP5-9P26371 169 aa3.91□□□□□ -1.78
MCF2L-218ENST00000442625 NEBP20929 6669 aa3.84□□□□□ -1.79
MCF2L-218ENST00000442625 SPRR2EP22531 72 aa3.84□□□□□ -1.79
MCF2L-218ENST00000442625 SPRR2BP35325 72 aa3.84□□□□□ -1.79
MCF2L-218ENST00000442625 SPRR2AP35326 72 aa3.84□□□□□ -1.79
MCF2L-218ENST00000442625 KRTAP6-2Q3LI66 62 aa3.8□□□□□ -1.8
MCF2L-218ENST00000442625 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
MCF2L-218ENST00000442625 MT3P25713 68 aa3.76□□□□□ -1.81
MCF2L-218ENST00000442625 SPRR2DP22532 72 aa3.66□□□□□ -1.82
MCF2L-218ENST00000442625 KRTAP5-3Q6L8H2 238 aa3.51□□□□□ -1.85
MCF2L-218ENST00000442625 KRTAP5-4Q6L8H1 288 aa3.32□□□□□ -1.88
MCF2L-218ENST00000442625 MT4P47944 62 aa3.31□□□□□ -1.88
MCF2L-218ENST00000442625 KRTAP20-2Q3LI61 65 aa3.18□□□□□ -1.9
MCF2L-218ENST00000442625 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
MCF2L-218ENST00000442625 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
MCF2L-218ENST00000442625 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
MCF2L-218ENST00000442625 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
MCF2L-218ENST00000442625 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
MCF2L-218ENST00000442625 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
MCF2L-218ENST00000442625 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
MCF2L-218ENST00000442625 AHNAK2Q8IVF2 5795 aa2.96□□□□□ -1.93
MCF2L-218ENST00000442625 KRTAP5-10Q6L8G5 202 aa2.95□□□□□ -1.94
MCF2L-218ENST00000442625 LCE1CQ5T751 118 aa2.92□□□□□ -1.94
MCF2L-218ENST00000442625 KRTAP5-7Q6L8G8 165 aa2.91□□□□□ -1.94
MCF2L-218ENST00000442625 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
MCF2L-218ENST00000442625 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
MCF2L-218ENST00000442625 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
MCF2L-218ENST00000442625 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
MCF2L-218ENST00000442625 KRTAP5-8O75690 187 aa2.57□□□□□ -2
MCF2L-218ENST00000442625 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
MCF2L-218ENST00000442625 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
MCF2L-218ENST00000442625 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
MCF2L-218ENST00000442625 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
MCF2L-218ENST00000442625 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 6.9 ms