RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 PSPHP1O15172 72 aa3.77□□□□□ -1.81
MCF2L-216ENST00000439475 KRTAP25-1Q3LHN0 102 aa3.72□□□□□ -1.81
MCF2L-216ENST00000439475 MT1LQ93083 61 aa3.72□□□□□ -1.81
MCF2L-216ENST00000439475 DSTQ03001 7570 aaKnown RBP3.7□□□□□ -1.82
MCF2L-216ENST00000439475 A6NED7 52 aa3.69□□□□□ -1.82
MCF2L-216ENST00000439475 MT1MQ8N339 61 aa3.69□□□□□ -1.82
MCF2L-216ENST00000439475 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
MCF2L-216ENST00000439475 RPS28P62857 69 aaKnown RBP3.67□□□□□ -1.82
MCF2L-216ENST00000439475 PCP4P48539 62 aa3.64□□□□□ -1.83
MCF2L-216ENST00000439475 KRTAP23-1A1A580 65 aa3.59□□□□□ -1.83
MCF2L-216ENST00000439475 LCE4AQ5TA78 99 aa3.58□□□□□ -1.84
MCF2L-216ENST00000439475 KRTAP4-9Q9BYQ8 210 aa3.58□□□□□ -1.84
MCF2L-216ENST00000439475 CDC42SE1Q9NRR8 79 aa3.58□□□□□ -1.84
MCF2L-216ENST00000439475 KRTAP4-3Q9BYR4 195 aa3.57□□□□□ -1.84
MCF2L-216ENST00000439475 KRTAP19-4Q3LI73 84 aa3.55□□□□□ -1.84
MCF2L-216ENST00000439475 GPR98Q8WXG9 6306 aa3.54□□□□□ -1.84
MCF2L-216ENST00000439475 ROMO1P60602 79 aa3.51□□□□□ -1.85
MCF2L-216ENST00000439475 LCE1DQ5T752 114 aa3.51□□□□□ -1.85
MCF2L-216ENST00000439475 KRTAP4-7Q9BYR0 210 aa3.51□□□□□ -1.85
MCF2L-216ENST00000439475 MT4P47944 62 aa3.5□□□□□ -1.85
MCF2L-216ENST00000439475 KRTAP15-1Q3LI76 137 aa3.47□□□□□ -1.85
MCF2L-216ENST00000439475 KRTAP5-4Q6L8H1 288 aa3.47□□□□□ -1.85
MCF2L-216ENST00000439475 LCE3CQ5T5A8 94 aa3.38□□□□□ -1.87
MCF2L-216ENST00000439475 KRTAP4-6Q9BYQ5 205 aa3.38□□□□□ -1.87
MCF2L-216ENST00000439475 KRTAP5-5Q701N2 237 aaPredicted RBP3.35□□□□□ -1.87
MCF2L-216ENST00000439475 KRTAP12-4P60329 112 aa3.34□□□□□ -1.87
MCF2L-216ENST00000439475 LOC100996750A0A140TA64 210 aa3.33□□□□□ -1.88
MCF2L-216ENST00000439475 HMCN1Q96RW7 5635 aa3.29□□□□□ -1.88
MCF2L-216ENST00000439475 SPRR5A0A1B0GTR4 108 aa3.29□□□□□ -1.88
MCF2L-216ENST00000439475 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
MCF2L-216ENST00000439475 SYNE1Q8NF91 8797 aaKnown RBP3.22□□□□□ -1.89
MCF2L-216ENST00000439475 BRK1Q8WUW1 75 aa3.22□□□□□ -1.89
MCF2L-216ENST00000439475 KRTAP5-10Q6L8G5 202 aa3.2□□□□□ -1.9
MCF2L-216ENST00000439475 MT1AP04731 61 aa3.19□□□□□ -1.9
MCF2L-216ENST00000439475 AHNAK2Q8IVF2 5795 aa3.18□□□□□ -1.9
MCF2L-216ENST00000439475 KRTAP5-3Q6L8H2 238 aa3.18□□□□□ -1.9
MCF2L-216ENST00000439475 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
MCF2L-216ENST00000439475 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
MCF2L-216ENST00000439475 KRTAP5-7Q6L8G8 165 aa3.09□□□□□ -1.91
MCF2L-216ENST00000439475 KRTAP9-4Q9BYQ2 154 aa3.08□□□□□ -1.92
MCF2L-216ENST00000439475 PMAIP1Q13794 54 aa3.05□□□□□ -1.92
MCF2L-216ENST00000439475 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
MCF2L-216ENST00000439475 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
MCF2L-216ENST00000439475 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
MCF2L-216ENST00000439475 MT3P25713 68 aa2.95□□□□□ -1.94
MCF2L-216ENST00000439475 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
MCF2L-216ENST00000439475 PRAC1Q96KF2 57 aa2.86□□□□□ -1.95
MCF2L-216ENST00000439475 PRO0628Q9UI54 55 aa2.84□□□□□ -1.95
MCF2L-216ENST00000439475 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
MCF2L-216ENST00000439475 KRTAP9-9Q9BYP9 154 aa2.76□□□□□ -1.97
MCF2L-216ENST00000439475 KTN1-AS1Q86SY8 53 aa2.72□□□□□ -1.97
MCF2L-216ENST00000439475 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
MCF2L-216ENST00000439475 AHNAKQ09666 5890 aaKnown RBP2.69□□□□□ -1.98
MCF2L-216ENST00000439475 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
MCF2L-216ENST00000439475 SVIPQ8NHG7 77 aa2.62□□□□□ -1.99
MCF2L-216ENST00000439475 MUC5ACP98088 5654 aa2.61□□□□□ -1.99
MCF2L-216ENST00000439475 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
MCF2L-216ENST00000439475 LUZP6Q538Z0 58 aa2.53□□□□□ -2
MCF2L-216ENST00000439475 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
MCF2L-216ENST00000439475 LCE3DQ9BYE3 92 aa2.47□□□□□ -2.01
MCF2L-216ENST00000439475 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
MCF2L-216ENST00000439475 LCE1CQ5T751 118 aa2.46□□□□□ -2.02
MCF2L-216ENST00000439475 LCE3EQ5T5B0 92 aa2.35□□□□□ -2.03
MCF2L-216ENST00000439475 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
MCF2L-216ENST00000439475 KRTAP5-11Q6L8G4 156 aa2.22□□□□□ -2.05
MCF2L-216ENST00000439475 KRTAP4-12Q9BQ66 201 aa2.22□□□□□ -2.05
MCF2L-216ENST00000439475 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
MCF2L-216ENST00000439475 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
MCF2L-216ENST00000439475 NDUFAF8A1L188 74 aa2□□□□□ -2.09
MCF2L-216ENST00000439475 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
MCF2L-216ENST00000439475 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
MCF2L-216ENST00000439475 PRM1P04553 51 aa1.78□□□□□ -2.12
MCF2L-216ENST00000439475 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
MCF2L-216ENST00000439475 A0A0A0MQY5 61 aa1.67□□□□□ -2.14
MCF2L-216ENST00000439475 INE1O15225 51 aa1.67□□□□□ -2.14
MCF2L-216ENST00000439475 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
MCF2L-216ENST00000439475 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
MCF2L-216ENST00000439475 H3BS24 57 aa0.76□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 195.1 ms