RNA–Protein interactions for RNA: ENST00000439247.2

PCNX3-202, Transcript of pecanex 3, humanhuman

TSL 1 (best)

Gene PCNX3, Length 3,104 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX3-202ENST00000439247 KRTAP9-4Q9BYQ2 154 aa4.76□□□□□ -1.65
PCNX3-202ENST00000439247 MACF1Q9UPN3 7388 aaKnown RBP4.74□□□□□ -1.65
PCNX3-202ENST00000439247 KRTAP2-3P0C7H8 128 aa4.71□□□□□ -1.66
PCNX3-202ENST00000439247 KRTAP2-4Q9BYR9 128 aa4.71□□□□□ -1.66
PCNX3-202ENST00000439247 KRTAP2-1Q9BYU5 128 aa4.71□□□□□ -1.66
PCNX3-202ENST00000439247 KRTAP19-7Q3SYF9 63 aa4.7□□□□□ -1.66
PCNX3-202ENST00000439247 LCE4AQ5TA78 99 aa4.66□□□□□ -1.66
PCNX3-202ENST00000439247 SYNE2Q8WXH0 6885 aaKnown RBP4.65□□□□□ -1.66
PCNX3-202ENST00000439247 KRTAP9-9Q9BYP9 154 aa4.63□□□□□ -1.67
PCNX3-202ENST00000439247 MUC12Q9UKN1 5478 aa4.58□□□□□ -1.68
PCNX3-202ENST00000439247 MT1LQ93083 61 aa4.56□□□□□ -1.68
PCNX3-202ENST00000439247 KRTAP9-7A8MTY7 169 aa4.55□□□□□ -1.68
PCNX3-202ENST00000439247 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
PCNX3-202ENST00000439247 MT1EP04732 61 aa4.51□□□□□ -1.69
PCNX3-202ENST00000439247 LCE1FQ5T754 118 aa4.51□□□□□ -1.69
PCNX3-202ENST00000439247 KRTAP4-3Q9BYR4 195 aa4.49□□□□□ -1.69
PCNX3-202ENST00000439247 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.47□□□□□ -1.69
PCNX3-202ENST00000439247 MDN1Q9NU22 5596 aa4.44□□□□□ -1.7
PCNX3-202ENST00000439247 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
PCNX3-202ENST00000439247 MT1GP13640 62 aa4.39□□□□□ -1.71
PCNX3-202ENST00000439247 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
PCNX3-202ENST00000439247 DSTQ03001 7570 aaKnown RBP4.34□□□□□ -1.71
PCNX3-202ENST00000439247 KRTAP12-4P60329 112 aa4.33□□□□□ -1.72
PCNX3-202ENST00000439247 KRTAP5-9P26371 169 aa4.32□□□□□ -1.72
PCNX3-202ENST00000439247 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
PCNX3-202ENST00000439247 KRTAP19-3Q7Z4W3 81 aa4.26□□□□□ -1.73
PCNX3-202ENST00000439247 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
PCNX3-202ENST00000439247 LCE1AQ5T7P2 110 aa4.22□□□□□ -1.73
PCNX3-202ENST00000439247 MT1MQ8N339 61 aa4.2□□□□□ -1.74
PCNX3-202ENST00000439247 KRTAP4-9Q9BYQ8 210 aa4.2□□□□□ -1.74
PCNX3-202ENST00000439247 SPRR2EP22531 72 aa4.19□□□□□ -1.74
PCNX3-202ENST00000439247 SPRR2BP35325 72 aa4.19□□□□□ -1.74
PCNX3-202ENST00000439247 SPRR2AP35326 72 aa4.19□□□□□ -1.74
PCNX3-202ENST00000439247 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
PCNX3-202ENST00000439247 LCE3BQ5TA77 95 aa4.15□□□□□ -1.75
PCNX3-202ENST00000439247 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.75
PCNX3-202ENST00000439247 NEBP20929 6669 aa4.07□□□□□ -1.76
PCNX3-202ENST00000439247 LCE3EQ5T5B0 92 aa4.03□□□□□ -1.76
PCNX3-202ENST00000439247 SPRR2DP22532 72 aa4.02□□□□□ -1.77
PCNX3-202ENST00000439247 KRTAP6-1Q3LI64 71 aa3.94□□□□□ -1.78
PCNX3-202ENST00000439247 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
PCNX3-202ENST00000439247 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.79
PCNX3-202ENST00000439247 PRM1P04553 51 aa3.89□□□□□ -1.79
PCNX3-202ENST00000439247 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
PCNX3-202ENST00000439247 LCE3DQ9BYE3 92 aa3.88□□□□□ -1.79
PCNX3-202ENST00000439247 MT1AP04731 61 aa3.85□□□□□ -1.79
PCNX3-202ENST00000439247 KRTAP20-1Q3LI63 56 aa3.81□□□□□ -1.8
PCNX3-202ENST00000439247 MT3P25713 68 aa3.68□□□□□ -1.82
PCNX3-202ENST00000439247 KRTAP6-2Q3LI66 62 aa3.68□□□□□ -1.82
PCNX3-202ENST00000439247 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
PCNX3-202ENST00000439247 MT4P47944 62 aa3.57□□□□□ -1.84
PCNX3-202ENST00000439247 KRTAP4-6Q9BYQ5 205 aa3.55□□□□□ -1.84
PCNX3-202ENST00000439247 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
PCNX3-202ENST00000439247 HMCN1Q96RW7 5635 aa3.53□□□□□ -1.84
PCNX3-202ENST00000439247 MUC19Q7Z5P9 8384 aa3.43□□□□□ -1.86
PCNX3-202ENST00000439247 KRTAP20-2Q3LI61 65 aa3.4□□□□□ -1.87
PCNX3-202ENST00000439247 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
PCNX3-202ENST00000439247 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
PCNX3-202ENST00000439247 GPR98Q8WXG9 6306 aa3.22□□□□□ -1.89
PCNX3-202ENST00000439247 AHNAK2Q8IVF2 5795 aa3.1□□□□□ -1.91
PCNX3-202ENST00000439247 MUC5ACP98088 5654 aa3.01□□□□□ -1.93
PCNX3-202ENST00000439247 KRTAP5-10Q6L8G5 202 aa2.97□□□□□ -1.93
PCNX3-202ENST00000439247 KRTAP4-11Q9BYQ6 195 aa2.97□□□□□ -1.93
PCNX3-202ENST00000439247 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
PCNX3-202ENST00000439247 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
PCNX3-202ENST00000439247 LCE1BQ5T7P3 118 aa2.83□□□□□ -1.96
PCNX3-202ENST00000439247 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
PCNX3-202ENST00000439247 KRTAP4-2Q9BYR5 136 aa2.74□□□□□ -1.97
PCNX3-202ENST00000439247 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
PCNX3-202ENST00000439247 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
PCNX3-202ENST00000439247 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
PCNX3-202ENST00000439247 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.47□□□□□ -2.01
PCNX3-202ENST00000439247 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
PCNX3-202ENST00000439247 AHNAKQ09666 5890 aaKnown RBP2.44□□□□□ -2.02
PCNX3-202ENST00000439247 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
PCNX3-202ENST00000439247 KRTAP5-11Q6L8G4 156 aa2.36□□□□□ -2.03
PCNX3-202ENST00000439247 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
PCNX3-202ENST00000439247 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 7 ms