RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 SPRR2DP22532 72 aa4.11□□□□□ -1.75
TCOF1-205ENST00000439160 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
TCOF1-205ENST00000439160 KRTAP19-3Q7Z4W3 81 aa4.11□□□□□ -1.75
TCOF1-205ENST00000439160 LCE2DQ5TA82 110 aaPredicted RBP4.07□□□□□ -1.76
TCOF1-205ENST00000439160 KRTAP9-2Q9BYQ4 174 aa4.07□□□□□ -1.76
TCOF1-205ENST00000439160 KRTAP12-4P60329 112 aa4□□□□□ -1.77
TCOF1-205ENST00000439160 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
TCOF1-205ENST00000439160 MT1MQ8N339 61 aa3.97□□□□□ -1.77
TCOF1-205ENST00000439160 KRTAP4-3Q9BYR4 195 aa3.96□□□□□ -1.77
TCOF1-205ENST00000439160 OBSCNQ5VST9 7968 aa3.96□□□□□ -1.78
TCOF1-205ENST00000439160 LOC100996750A0A140TA64 210 aa3.92□□□□□ -1.78
TCOF1-205ENST00000439160 KMT2DO14686 5537 aa3.88□□□□□ -1.79
TCOF1-205ENST00000439160 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
TCOF1-205ENST00000439160 FCGBPQ9Y6R7 5405 aaPredicted RBP3.85□□□□□ -1.79
TCOF1-205ENST00000439160 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
TCOF1-205ENST00000439160 SYNE2Q8WXH0 6885 aaKnown RBP3.84□□□□□ -1.79
TCOF1-205ENST00000439160 LCE3EQ5T5B0 92 aa3.76□□□□□ -1.81
TCOF1-205ENST00000439160 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
TCOF1-205ENST00000439160 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
TCOF1-205ENST00000439160 SSPOA2VEC9 5147 aa3.72□□□□□ -1.81
TCOF1-205ENST00000439160 MT4P47944 62 aa3.71□□□□□ -1.82
TCOF1-205ENST00000439160 MT3P25713 68 aa3.64□□□□□ -1.83
TCOF1-205ENST00000439160 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
TCOF1-205ENST00000439160 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
TCOF1-205ENST00000439160 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
TCOF1-205ENST00000439160 MT1AP04731 61 aa3.6□□□□□ -1.83
TCOF1-205ENST00000439160 MACF1Q9UPN3 7388 aaKnown RBP3.6□□□□□ -1.83
TCOF1-205ENST00000439160 MUC12Q9UKN1 5478 aa3.6□□□□□ -1.83
TCOF1-205ENST00000439160 LCE5AQ5TCM9 118 aa3.6□□□□□ -1.83
TCOF1-205ENST00000439160 KRTAP4-9Q9BYQ8 210 aa3.59□□□□□ -1.83
TCOF1-205ENST00000439160 LCE1AQ5T7P2 110 aa3.56□□□□□ -1.84
TCOF1-205ENST00000439160 KRTAP9-7A8MTY7 169 aa3.56□□□□□ -1.84
TCOF1-205ENST00000439160 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
TCOF1-205ENST00000439160 KRTAP6-3Q3LI67 103 aa3.54□□□□□ -1.84
TCOF1-205ENST00000439160 PRM1P04553 51 aa3.5□□□□□ -1.85
TCOF1-205ENST00000439160 KRTAP6-1Q3LI64 71 aa3.5□□□□□ -1.85
TCOF1-205ENST00000439160 LCE1DQ5T752 114 aa3.44□□□□□ -1.86
TCOF1-205ENST00000439160 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
TCOF1-205ENST00000439160 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
TCOF1-205ENST00000439160 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
TCOF1-205ENST00000439160 MDN1Q9NU22 5596 aa3.37□□□□□ -1.87
TCOF1-205ENST00000439160 KRTAP9-4Q9BYQ2 154 aa3.33□□□□□ -1.88
TCOF1-205ENST00000439160 KRTAP2-2Q9BYT5 123 aa3.26□□□□□ -1.89
TCOF1-205ENST00000439160 KRTAP5-9P26371 169 aa3.25□□□□□ -1.89
TCOF1-205ENST00000439160 LCE4AQ5TA78 99 aa3.23□□□□□ -1.89
TCOF1-205ENST00000439160 NEBP20929 6669 aa3.2□□□□□ -1.9
TCOF1-205ENST00000439160 KRTAP4-6Q9BYQ5 205 aa3.04□□□□□ -1.92
TCOF1-205ENST00000439160 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
TCOF1-205ENST00000439160 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
TCOF1-205ENST00000439160 GPR98Q8WXG9 6306 aa2.82□□□□□ -1.96
TCOF1-205ENST00000439160 KRTAP5-5Q701N2 237 aaPredicted RBP2.8□□□□□ -1.96
TCOF1-205ENST00000439160 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
TCOF1-205ENST00000439160 LCE1EQ5T753 118 aa2.76□□□□□ -1.97
TCOF1-205ENST00000439160 LCE1FQ5T754 118 aa2.76□□□□□ -1.97
TCOF1-205ENST00000439160 MUC5ACP98088 5654 aa2.7□□□□□ -1.98
TCOF1-205ENST00000439160 KRTAP9-9Q9BYP9 154 aa2.69□□□□□ -1.98
TCOF1-205ENST00000439160 KRTAP5-4Q6L8H1 288 aa2.67□□□□□ -1.98
TCOF1-205ENST00000439160 KRTAP4-11Q9BYQ6 195 aa2.65□□□□□ -1.98
TCOF1-205ENST00000439160 HMCN1Q96RW7 5635 aa2.59□□□□□ -1.99
TCOF1-205ENST00000439160 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
TCOF1-205ENST00000439160 KRTAP4-12Q9BQ66 201 aa2.5□□□□□ -2.01
TCOF1-205ENST00000439160 KRTAP4-2Q9BYR5 136 aa2.5□□□□□ -2.01
TCOF1-205ENST00000439160 AHNAK2Q8IVF2 5795 aa2.44□□□□□ -2.02
TCOF1-205ENST00000439160 KRTAP5-3Q6L8H2 238 aa2.43□□□□□ -2.02
TCOF1-205ENST00000439160 KRTAP5-2Q701N4 177 aa2.31□□□□□ -2.04
TCOF1-205ENST00000439160 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
TCOF1-205ENST00000439160 MUC5BQ9HC84 5762 aaPredicted RBP2.18□□□□□ -2.06
TCOF1-205ENST00000439160 KRTAP5-10Q6L8G5 202 aa2.15□□□□□ -2.07
TCOF1-205ENST00000439160 KRTAP5-1Q6L8H4 278 aa2.06□□□□□ -2.08
TCOF1-205ENST00000439160 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
TCOF1-205ENST00000439160 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
TCOF1-205ENST00000439160 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
TCOF1-205ENST00000439160 KRTAP5-7Q6L8G8 165 aa1.9□□□□□ -2.11
TCOF1-205ENST00000439160 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
TCOF1-205ENST00000439160 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
TCOF1-205ENST00000439160 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
TCOF1-205ENST00000439160 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 8.9 ms