RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 CRCT1Q9UGL9 99 aa2.5□□□□□ -2.01
CSDE1-205ENST00000438362 LCE3CQ5T5A8 94 aa2.5□□□□□ -2.01
CSDE1-205ENST00000438362 KRTAP5-3Q6L8H2 238 aa2.5□□□□□ -2.01
CSDE1-205ENST00000438362 UBR4Q5T4S7 5183 aa2.49□□□□□ -2.01
CSDE1-205ENST00000438362 FAT4Q6V0I7 4981 aa2.48□□□□□ -2.01
CSDE1-205ENST00000438362 MT3P25713 68 aa2.39□□□□□ -2.03
CSDE1-205ENST00000438362 RNF213Q63HN8 5207 aa2.37□□□□□ -2.03
CSDE1-205ENST00000438362 MUC2Q02817 5179 aa2.34□□□□□ -2.03
CSDE1-205ENST00000438362 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
CSDE1-205ENST00000438362 SPRR2FQ96RM1 72 aa2.27□□□□□ -2.05
CSDE1-205ENST00000438362 MT1LQ93083 61 aa2.24□□□□□ -2.05
CSDE1-205ENST00000438362 MT1GP13640 62 aa2.24□□□□□ -2.05
CSDE1-205ENST00000438362 MT1EP04732 61 aa2.23□□□□□ -2.05
CSDE1-205ENST00000438362 KRTAP12-4P60329 112 aa2.21□□□□□ -2.06
CSDE1-205ENST00000438362 KRTAP19-7Q3SYF9 63 aa2.19□□□□□ -2.06
CSDE1-205ENST00000438362 KRTAP19-3Q7Z4W3 81 aa2.16□□□□□ -2.06
CSDE1-205ENST00000438362 KRTAP2-2Q9BYT5 123 aa2.16□□□□□ -2.06
CSDE1-205ENST00000438362 KRTAP2-3P0C7H8 128 aa2.13□□□□□ -2.07
CSDE1-205ENST00000438362 KRTAP2-4Q9BYR9 128 aa2.13□□□□□ -2.07
CSDE1-205ENST00000438362 KRTAP2-1Q9BYU5 128 aa2.13□□□□□ -2.07
CSDE1-205ENST00000438362 KRTAP9-6A8MVA2 160 aa2.13□□□□□ -2.07
CSDE1-205ENST00000438362 KRTAP19-6Q3LI70 58 aa2.12□□□□□ -2.07
CSDE1-205ENST00000438362 MT1MQ8N339 61 aa2.12□□□□□ -2.07
CSDE1-205ENST00000438362 SSPOA2VEC9 5147 aa2.11□□□□□ -2.07
CSDE1-205ENST00000438362 FSIP2Q5CZC0 6907 aa2.11□□□□□ -2.07
CSDE1-205ENST00000438362 SYNE1Q8NF91 8797 aaKnown RBP2.1□□□□□ -2.07
CSDE1-205ENST00000438362 LCE1EQ5T753 118 aa2.1□□□□□ -2.07
CSDE1-205ENST00000438362 KRTAP4-3Q9BYR4 195 aa2.1□□□□□ -2.07
CSDE1-205ENST00000438362 LCE3DQ9BYE3 92 aa2.08□□□□□ -2.08
CSDE1-205ENST00000438362 SPRR2EP22531 72 aa2.06□□□□□ -2.08
CSDE1-205ENST00000438362 SPRR2BP35325 72 aa2.06□□□□□ -2.08
CSDE1-205ENST00000438362 SPRR2AP35326 72 aa2.06□□□□□ -2.08
CSDE1-205ENST00000438362 LCE3EQ5T5B0 92 aa2.06□□□□□ -2.08
CSDE1-205ENST00000438362 KMT2DO14686 5537 aa2.01□□□□□ -2.09
CSDE1-205ENST00000438362 USH2AO75445 5202 aa2.01□□□□□ -2.09
CSDE1-205ENST00000438362 SPRR2DP22532 72 aa1.98□□□□□ -2.09
CSDE1-205ENST00000438362 FCGBPQ9Y6R7 5405 aaPredicted RBP1.96□□□□□ -2.1
CSDE1-205ENST00000438362 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
CSDE1-205ENST00000438362 MT1AP04731 61 aa1.95□□□□□ -2.1
CSDE1-205ENST00000438362 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.94□□□□□ -2.1
CSDE1-205ENST00000438362 PRM1P04553 51 aa1.93□□□□□ -2.1
CSDE1-205ENST00000438362 KRTAP5-11Q6L8G4 156 aa1.91□□□□□ -2.1
CSDE1-205ENST00000438362 OBSCNQ5VST9 7968 aa1.91□□□□□ -2.1
CSDE1-205ENST00000438362 GPR98Q8WXG9 6306 aa1.91□□□□□ -2.1
CSDE1-205ENST00000438362 KRTAP6-1Q3LI64 71 aa1.89□□□□□ -2.11
CSDE1-205ENST00000438362 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
CSDE1-205ENST00000438362 MUC12Q9UKN1 5478 aa1.86□□□□□ -2.11
CSDE1-205ENST00000438362 SYNE2Q8WXH0 6885 aaKnown RBP1.85□□□□□ -2.11
CSDE1-205ENST00000438362 NEBP20929 6669 aa1.81□□□□□ -2.12
CSDE1-205ENST00000438362 MACF1Q9UPN3 7388 aaKnown RBP1.81□□□□□ -2.12
CSDE1-205ENST00000438362 KRTAP6-2Q3LI66 62 aa1.78□□□□□ -2.12
CSDE1-205ENST00000438362 LCE1FQ5T754 118 aa1.77□□□□□ -2.13
CSDE1-205ENST00000438362 KRTAP5-9P26371 169 aa1.76□□□□□ -2.13
CSDE1-205ENST00000438362 MT4P47944 62 aa1.76□□□□□ -2.13
CSDE1-205ENST00000438362 KRTAP6-3Q3LI67 103 aa1.75□□□□□ -2.13
CSDE1-205ENST00000438362 KRTAP20-1Q3LI63 56 aa1.74□□□□□ -2.13
CSDE1-205ENST00000438362 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
CSDE1-205ENST00000438362 HMCN1Q96RW7 5635 aa1.69□□□□□ -2.14
CSDE1-205ENST00000438362 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
CSDE1-205ENST00000438362 LCE1BQ5T7P3 118 aa1.68□□□□□ -2.14
CSDE1-205ENST00000438362 MDN1Q9NU22 5596 aa1.66□□□□□ -2.14
CSDE1-205ENST00000438362 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
CSDE1-205ENST00000438362 KRTAP5-1Q6L8H4 278 aa1.63□□□□□ -2.15
CSDE1-205ENST00000438362 KRTAP5-5Q701N2 237 aaPredicted RBP1.62□□□□□ -2.15
CSDE1-205ENST00000438362 KRTAP5-4Q6L8H1 288 aa1.6□□□□□ -2.15
CSDE1-205ENST00000438362 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
CSDE1-205ENST00000438362 KRTAP5-10Q6L8G5 202 aa1.52□□□□□ -2.17
CSDE1-205ENST00000438362 KRTAP20-2Q3LI61 65 aa1.49□□□□□ -2.17
CSDE1-205ENST00000438362 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
CSDE1-205ENST00000438362 LCE1CQ5T751 118 aa1.38□□□□□ -2.19
CSDE1-205ENST00000438362 MUC5ACP98088 5654 aa1.32□□□□□ -2.2
CSDE1-205ENST00000438362 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.2
CSDE1-205ENST00000438362 KRTAP5-8O75690 187 aa1.19□□□□□ -2.22
CSDE1-205ENST00000438362 KRTAP21-2Q3LI59 83 aa1.09□□□□□ -2.23
CSDE1-205ENST00000438362 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
CSDE1-205ENST00000438362 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
CSDE1-205ENST00000438362 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms