RNA–Protein interactions for RNA: ENST00000432954.1

CCDC171-202, Transcript of coiled-coil domain containing 171, humanhuman

TSL 2

Gene CCDC171, Length 2,181 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-202ENST00000432954 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
CCDC171-202ENST00000432954 LRP2P98164 4655 aa3.78□□□□□ -1.8
CCDC171-202ENST00000432954 HMCN2Q8NDA2 5059 aa3.77□□□□□ -1.81
CCDC171-202ENST00000432954 LCE1EQ5T753 118 aa3.73□□□□□ -1.81
CCDC171-202ENST00000432954 KRTAP19-2Q3LHN2 52 aa3.7□□□□□ -1.82
CCDC171-202ENST00000432954 KRTAP4-1Q9BYQ7 146 aa3.7□□□□□ -1.82
CCDC171-202ENST00000432954 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
CCDC171-202ENST00000432954 GPR98Q8WXG9 6306 aa3.67□□□□□ -1.82
CCDC171-202ENST00000432954 KRTAP5-4Q6L8H1 288 aa3.67□□□□□ -1.82
CCDC171-202ENST00000432954 SPRR2GQ9BYE4 73 aa3.65□□□□□ -1.82
CCDC171-202ENST00000432954 KRTAP19-5Q3LI72 72 aa3.59□□□□□ -1.84
CCDC171-202ENST00000432954 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
CCDC171-202ENST00000432954 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
CCDC171-202ENST00000432954 RNF213Q63HN8 5207 aa3.52□□□□□ -1.85
CCDC171-202ENST00000432954 MT1HP80294 61 aa3.5□□□□□ -1.85
CCDC171-202ENST00000432954 UBR4Q5T4S7 5183 aa3.46□□□□□ -1.86
CCDC171-202ENST00000432954 FAT4Q6V0I7 4981 aa3.43□□□□□ -1.86
CCDC171-202ENST00000432954 PRM1P04553 51 aa3.42□□□□□ -1.86
CCDC171-202ENST00000432954 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
CCDC171-202ENST00000432954 KRTAP5-1Q6L8H4 278 aa3.41□□□□□ -1.86
CCDC171-202ENST00000432954 MT1XP80297 61 aa3.4□□□□□ -1.87
CCDC171-202ENST00000432954 MUC2Q02817 5179 aa3.37□□□□□ -1.87
CCDC171-202ENST00000432954 MT2AP02795 61 aa3.36□□□□□ -1.87
CCDC171-202ENST00000432954 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
CCDC171-202ENST00000432954 MT1FP04733 61 aa3.31□□□□□ -1.88
CCDC171-202ENST00000432954 KRTAP5-5Q701N2 237 aaPredicted RBP3.28□□□□□ -1.88
CCDC171-202ENST00000432954 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
CCDC171-202ENST00000432954 MT1BP07438 61 aa3.18□□□□□ -1.9
CCDC171-202ENST00000432954 MT1AP04731 61 aa3.18□□□□□ -1.9
CCDC171-202ENST00000432954 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
CCDC171-202ENST00000432954 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
CCDC171-202ENST00000432954 MT3P25713 68 aa3.12□□□□□ -1.91
CCDC171-202ENST00000432954 MT1EP04732 61 aa3.09□□□□□ -1.91
CCDC171-202ENST00000432954 LCE3DQ9BYE3 92 aa3.07□□□□□ -1.92
CCDC171-202ENST00000432954 KRTAP5-8O75690 187 aa3.05□□□□□ -1.92
CCDC171-202ENST00000432954 KRTAP19-6Q3LI70 58 aa3.05□□□□□ -1.92
CCDC171-202ENST00000432954 MT1LQ93083 61 aa3.05□□□□□ -1.92
CCDC171-202ENST00000432954 KRTAP19-7Q3SYF9 63 aa3.03□□□□□ -1.92
CCDC171-202ENST00000432954 CRCT1Q9UGL9 99 aa3.02□□□□□ -1.93
CCDC171-202ENST00000432954 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
CCDC171-202ENST00000432954 USH2AO75445 5202 aa2.97□□□□□ -1.93
CCDC171-202ENST00000432954 AHNAKQ09666 5890 aaKnown RBP2.95□□□□□ -1.94
CCDC171-202ENST00000432954 SSPOA2VEC9 5147 aa2.92□□□□□ -1.94
CCDC171-202ENST00000432954 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
CCDC171-202ENST00000432954 KRTAP4-3Q9BYR4 195 aa2.87□□□□□ -1.95
CCDC171-202ENST00000432954 SPRR2FQ96RM1 72 aa2.85□□□□□ -1.95
CCDC171-202ENST00000432954 MT1GP13640 62 aa2.84□□□□□ -1.95
CCDC171-202ENST00000432954 NEBP20929 6669 aa2.78□□□□□ -1.96
CCDC171-202ENST00000432954 FCGBPQ9Y6R7 5405 aaPredicted RBP2.75□□□□□ -1.97
CCDC171-202ENST00000432954 MACF1Q9UPN3 7388 aaKnown RBP2.75□□□□□ -1.97
CCDC171-202ENST00000432954 SPRR2AP35326 72 aa2.73□□□□□ -1.97
CCDC171-202ENST00000432954 OBSCNQ5VST9 7968 aa2.73□□□□□ -1.97
CCDC171-202ENST00000432954 SYNE2Q8WXH0 6885 aaKnown RBP2.71□□□□□ -1.97
CCDC171-202ENST00000432954 SPRR2DP22532 72 aa2.7□□□□□ -1.98
CCDC171-202ENST00000432954 KMT2DO14686 5537 aa2.69□□□□□ -1.98
CCDC171-202ENST00000432954 KRTAP20-1Q3LI63 56 aa2.69□□□□□ -1.98
CCDC171-202ENST00000432954 SPRR2BP35325 72 aa2.68□□□□□ -1.98
CCDC171-202ENST00000432954 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
CCDC171-202ENST00000432954 SPRR2EP22531 72 aa2.63□□□□□ -1.99
CCDC171-202ENST00000432954 KRTAP19-3Q7Z4W3 81 aa2.61□□□□□ -1.99
CCDC171-202ENST00000432954 MT1MQ8N339 61 aa2.61□□□□□ -1.99
CCDC171-202ENST00000432954 FSIP2Q5CZC0 6907 aa2.59□□□□□ -2
CCDC171-202ENST00000432954 KRTAP6-1Q3LI64 71 aa2.56□□□□□ -2
CCDC171-202ENST00000432954 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
CCDC171-202ENST00000432954 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
CCDC171-202ENST00000432954 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
CCDC171-202ENST00000432954 MUC12Q9UKN1 5478 aa2.41□□□□□ -2.02
CCDC171-202ENST00000432954 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
CCDC171-202ENST00000432954 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
CCDC171-202ENST00000432954 MDN1Q9NU22 5596 aa2.3□□□□□ -2.04
CCDC171-202ENST00000432954 DSTQ03001 7570 aaKnown RBP2.29□□□□□ -2.04
CCDC171-202ENST00000432954 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
CCDC171-202ENST00000432954 KRTAP5-10Q6L8G5 202 aa2.16□□□□□ -2.06
CCDC171-202ENST00000432954 KRTAP20-2Q3LI61 65 aa2.06□□□□□ -2.08
CCDC171-202ENST00000432954 MT4P47944 62 aa1.99□□□□□ -2.09
CCDC171-202ENST00000432954 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
CCDC171-202ENST00000432954 PHGR1C9JFL3 82 aa1.33□□□□□ -2.2
CCDC171-202ENST00000432954 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 42.8 ms