RNA–Protein interactions for RNA: ENST00000428331.6

ATP2C1-204, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATP2C1, Length 4,795 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-204ENST00000428331 LOC100996750A0A140TA64 210 aa3.42□□□□□ -1.86
ATP2C1-204ENST00000428331 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
ATP2C1-204ENST00000428331 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
ATP2C1-204ENST00000428331 MT1MQ8N339 61 aa3.38□□□□□ -1.87
ATP2C1-204ENST00000428331 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
ATP2C1-204ENST00000428331 KRTAP19-6Q3LI70 58 aa3.36□□□□□ -1.87
ATP2C1-204ENST00000428331 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
ATP2C1-204ENST00000428331 SPRR2FQ96RM1 72 aa3.29□□□□□ -1.88
ATP2C1-204ENST00000428331 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
ATP2C1-204ENST00000428331 LCE2DQ5TA82 110 aaPredicted RBP3.25□□□□□ -1.89
ATP2C1-204ENST00000428331 FSIP2Q5CZC0 6907 aa3.24□□□□□ -1.89
ATP2C1-204ENST00000428331 LCE3DQ9BYE3 92 aa3.21□□□□□ -1.9
ATP2C1-204ENST00000428331 SSPOA2VEC9 5147 aa3.19□□□□□ -1.9
ATP2C1-204ENST00000428331 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
ATP2C1-204ENST00000428331 FCGBPQ9Y6R7 5405 aaPredicted RBP3.17□□□□□ -1.9
ATP2C1-204ENST00000428331 MUC12Q9UKN1 5478 aa3.16□□□□□ -1.9
ATP2C1-204ENST00000428331 LCE5AQ5TCM9 118 aa3.16□□□□□ -1.9
ATP2C1-204ENST00000428331 KRTAP4-9Q9BYQ8 210 aa3.16□□□□□ -1.9
ATP2C1-204ENST00000428331 DSTQ03001 7570 aaKnown RBP3.15□□□□□ -1.9
ATP2C1-204ENST00000428331 MT1AP04731 61 aa3.15□□□□□ -1.91
ATP2C1-204ENST00000428331 PRM1P04553 51 aa3.07□□□□□ -1.92
ATP2C1-204ENST00000428331 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
ATP2C1-204ENST00000428331 KRTAP9-2Q9BYQ4 174 aa3.05□□□□□ -1.92
ATP2C1-204ENST00000428331 KRTAP9-7A8MTY7 169 aa2.99□□□□□ -1.93
ATP2C1-204ENST00000428331 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
ATP2C1-204ENST00000428331 SPRR2EP22531 72 aa2.93□□□□□ -1.94
ATP2C1-204ENST00000428331 SPRR2BP35325 72 aa2.93□□□□□ -1.94
ATP2C1-204ENST00000428331 SPRR2AP35326 72 aa2.93□□□□□ -1.94
ATP2C1-204ENST00000428331 LCE1AQ5T7P2 110 aa2.92□□□□□ -1.94
ATP2C1-204ENST00000428331 LCE1EQ5T753 118 aa2.91□□□□□ -1.94
ATP2C1-204ENST00000428331 KRTAP9-6A0A140TA67 174 aa2.9□□□□□ -1.95
ATP2C1-204ENST00000428331 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.95
ATP2C1-204ENST00000428331 KRTAP6-2Q3LI66 62 aa2.88□□□□□ -1.95
ATP2C1-204ENST00000428331 SYNE2Q8WXH0 6885 aaKnown RBP2.88□□□□□ -1.95
ATP2C1-204ENST00000428331 KRTAP9-4Q9BYQ2 154 aa2.87□□□□□ -1.95
ATP2C1-204ENST00000428331 MT3P25713 68 aa2.87□□□□□ -1.95
ATP2C1-204ENST00000428331 MACF1Q9UPN3 7388 aaKnown RBP2.82□□□□□ -1.96
ATP2C1-204ENST00000428331 SPRR2DP22532 72 aa2.8□□□□□ -1.96
ATP2C1-204ENST00000428331 KRTAP5-9P26371 169 aa2.74□□□□□ -1.97
ATP2C1-204ENST00000428331 MDN1Q9NU22 5596 aa2.71□□□□□ -1.98
ATP2C1-204ENST00000428331 KRTAP6-3Q3LI67 103 aa2.7□□□□□ -1.98
ATP2C1-204ENST00000428331 LCE1DQ5T752 114 aa2.7□□□□□ -1.98
ATP2C1-204ENST00000428331 KRTAP2-2Q9BYT5 123 aa2.69□□□□□ -1.98
ATP2C1-204ENST00000428331 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.6□□□□□ -1.99
ATP2C1-204ENST00000428331 LCE1FQ5T754 118 aa2.57□□□□□ -2
ATP2C1-204ENST00000428331 MT4P47944 62 aa2.48□□□□□ -2.01
ATP2C1-204ENST00000428331 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
ATP2C1-204ENST00000428331 KRTAP4-6Q9BYQ5 205 aa2.38□□□□□ -2.03
ATP2C1-204ENST00000428331 LCE4AQ5TA78 99 aa2.37□□□□□ -2.03
ATP2C1-204ENST00000428331 NEBP20929 6669 aa2.37□□□□□ -2.03
ATP2C1-204ENST00000428331 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
ATP2C1-204ENST00000428331 KRTAP20-2Q3LI61 65 aa2.34□□□□□ -2.03
ATP2C1-204ENST00000428331 KRTAP4-11Q9BYQ6 195 aa2.33□□□□□ -2.04
ATP2C1-204ENST00000428331 KRTAP5-2Q701N4 177 aa2.25□□□□□ -2.05
ATP2C1-204ENST00000428331 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
ATP2C1-204ENST00000428331 KRTAP20-1Q3LI63 56 aa2.22□□□□□ -2.05
ATP2C1-204ENST00000428331 KRTAP5-10Q6L8G5 202 aa2.17□□□□□ -2.06
ATP2C1-204ENST00000428331 KRTAP5-3Q6L8H2 238 aa2.11□□□□□ -2.07
ATP2C1-204ENST00000428331 HMCN1Q96RW7 5635 aa2.11□□□□□ -2.07
ATP2C1-204ENST00000428331 KRTAP5-1Q6L8H4 278 aa2.05□□□□□ -2.08
ATP2C1-204ENST00000428331 LCE1CQ5T751 118 aa2.04□□□□□ -2.08
ATP2C1-204ENST00000428331 GPR98Q8WXG9 6306 aa2.02□□□□□ -2.09
ATP2C1-204ENST00000428331 KRTAP4-2Q9BYR5 136 aa2□□□□□ -2.09
ATP2C1-204ENST00000428331 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
ATP2C1-204ENST00000428331 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
ATP2C1-204ENST00000428331 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
ATP2C1-204ENST00000428331 AHNAK2Q8IVF2 5795 aa1.86□□□□□ -2.11
ATP2C1-204ENST00000428331 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
ATP2C1-204ENST00000428331 KRTAP9-9Q9BYP9 154 aa1.77□□□□□ -2.13
ATP2C1-204ENST00000428331 KRTAP5-8O75690 187 aa1.75□□□□□ -2.13
ATP2C1-204ENST00000428331 KRTAP5-11Q6L8G4 156 aa1.73□□□□□ -2.13
ATP2C1-204ENST00000428331 KRTAP5-7Q6L8G8 165 aa1.71□□□□□ -2.14
ATP2C1-204ENST00000428331 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
ATP2C1-204ENST00000428331 MUC5BQ9HC84 5762 aaPredicted RBP1.59□□□□□ -2.15
ATP2C1-204ENST00000428331 AHNAKQ09666 5890 aaKnown RBP1.53□□□□□ -2.16
ATP2C1-204ENST00000428331 PHGR1C9JFL3 82 aa1.48□□□□□ -2.17
ATP2C1-204ENST00000428331 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 7.9 ms