RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 MT1LQ93083 61 aa5.26□□□□□ -1.57
C9orf3-206ENST00000428313 KRTAP9-7A8MTY7 169 aa5.21□□□□□ -1.58
C9orf3-206ENST00000428313 USH2AO75445 5202 aa5.21□□□□□ -1.58
C9orf3-206ENST00000428313 KMT2DO14686 5537 aa5.17□□□□□ -1.58
C9orf3-206ENST00000428313 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.16□□□□□ -1.58
C9orf3-206ENST00000428313 MT1EP04732 61 aa5.15□□□□□ -1.58
C9orf3-206ENST00000428313 SSPOA2VEC9 5147 aa5.15□□□□□ -1.59
C9orf3-206ENST00000428313 FCGBPQ9Y6R7 5405 aaPredicted RBP5.05□□□□□ -1.6
C9orf3-206ENST00000428313 SYNE2Q8WXH0 6885 aaKnown RBP4.98□□□□□ -1.61
C9orf3-206ENST00000428313 LOC100996750A0A140TA64 210 aa4.98□□□□□ -1.61
C9orf3-206ENST00000428313 MACF1Q9UPN3 7388 aaKnown RBP4.95□□□□□ -1.62
C9orf3-206ENST00000428313 MT1GP13640 62 aa4.92□□□□□ -1.62
C9orf3-206ENST00000428313 KRTAP4-3Q9BYR4 195 aa4.85□□□□□ -1.63
C9orf3-206ENST00000428313 MT1AP04731 61 aa4.84□□□□□ -1.64
C9orf3-206ENST00000428313 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
C9orf3-206ENST00000428313 PRM1P04553 51 aa4.77□□□□□ -1.65
C9orf3-206ENST00000428313 MT1MQ8N339 61 aa4.77□□□□□ -1.65
C9orf3-206ENST00000428313 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
C9orf3-206ENST00000428313 LCE3EQ5T5B0 92 aa4.71□□□□□ -1.66
C9orf3-206ENST00000428313 LCE3BQ5TA77 95 aa4.71□□□□□ -1.66
C9orf3-206ENST00000428313 KRTAP19-3Q7Z4W3 81 aa4.71□□□□□ -1.66
C9orf3-206ENST00000428313 KRTAP6-3Q3LI67 103 aa4.7□□□□□ -1.66
C9orf3-206ENST00000428313 KRTAP4-9Q9BYQ8 210 aa4.69□□□□□ -1.66
C9orf3-206ENST00000428313 LCE3DQ9BYE3 92 aa4.69□□□□□ -1.66
C9orf3-206ENST00000428313 MUC12Q9UKN1 5478 aa4.67□□□□□ -1.66
C9orf3-206ENST00000428313 KRTAP2-2Q9BYT5 123 aa4.63□□□□□ -1.67
C9orf3-206ENST00000428313 NEBP20929 6669 aa4.61□□□□□ -1.67
C9orf3-206ENST00000428313 LCE5AQ5TCM9 118 aa4.52□□□□□ -1.69
C9orf3-206ENST00000428313 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
C9orf3-206ENST00000428313 SYNE1Q8NF91 8797 aaKnown RBP4.51□□□□□ -1.69
C9orf3-206ENST00000428313 KRTAP20-1Q3LI63 56 aa4.51□□□□□ -1.69
C9orf3-206ENST00000428313 MDN1Q9NU22 5596 aa4.5□□□□□ -1.69
C9orf3-206ENST00000428313 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
C9orf3-206ENST00000428313 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
C9orf3-206ENST00000428313 SPRR2FQ96RM1 72 aa4.39□□□□□ -1.71
C9orf3-206ENST00000428313 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
C9orf3-206ENST00000428313 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
C9orf3-206ENST00000428313 SPRR2EP22531 72 aa4.15□□□□□ -1.74
C9orf3-206ENST00000428313 SPRR2BP35325 72 aa4.15□□□□□ -1.74
C9orf3-206ENST00000428313 SPRR2AP35326 72 aa4.15□□□□□ -1.74
C9orf3-206ENST00000428313 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
C9orf3-206ENST00000428313 KRTAP9-4Q9BYQ2 154 aa4.09□□□□□ -1.75
C9orf3-206ENST00000428313 SPRR2DP22532 72 aa4.01□□□□□ -1.77
C9orf3-206ENST00000428313 GPR98Q8WXG9 6306 aa4.01□□□□□ -1.77
C9orf3-206ENST00000428313 LCE1DQ5T752 114 aa3.99□□□□□ -1.77
C9orf3-206ENST00000428313 MT3P25713 68 aa3.92□□□□□ -1.78
C9orf3-206ENST00000428313 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
C9orf3-206ENST00000428313 HMCN1Q96RW7 5635 aa3.67□□□□□ -1.82
C9orf3-206ENST00000428313 AHNAK2Q8IVF2 5795 aa3.64□□□□□ -1.83
C9orf3-206ENST00000428313 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
C9orf3-206ENST00000428313 MT4P47944 62 aa3.58□□□□□ -1.84
C9orf3-206ENST00000428313 KRTAP5-10Q6L8G5 202 aa3.55□□□□□ -1.84
C9orf3-206ENST00000428313 KRTAP4-11Q9BYQ6 195 aa3.5□□□□□ -1.85
C9orf3-206ENST00000428313 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
C9orf3-206ENST00000428313 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
C9orf3-206ENST00000428313 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
C9orf3-206ENST00000428313 KRTAP5-2Q701N4 177 aa3.42□□□□□ -1.86
C9orf3-206ENST00000428313 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
C9orf3-206ENST00000428313 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
C9orf3-206ENST00000428313 MUC5ACP98088 5654 aa3.34□□□□□ -1.87
C9orf3-206ENST00000428313 KRTAP20-2Q3LI61 65 aa3.3□□□□□ -1.88
C9orf3-206ENST00000428313 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
C9orf3-206ENST00000428313 KRTAP21-1Q3LI58 79 aa3.13□□□□□ -1.91
C9orf3-206ENST00000428313 MUC5BQ9HC84 5762 aaPredicted RBP3.08□□□□□ -1.92
C9orf3-206ENST00000428313 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
C9orf3-206ENST00000428313 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
C9orf3-206ENST00000428313 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
C9orf3-206ENST00000428313 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
C9orf3-206ENST00000428313 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
C9orf3-206ENST00000428313 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
C9orf3-206ENST00000428313 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
C9orf3-206ENST00000428313 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
C9orf3-206ENST00000428313 MUC19Q7Z5P9 8384 aa2.65□□□□□ -1.99
C9orf3-206ENST00000428313 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
C9orf3-206ENST00000428313 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
C9orf3-206ENST00000428313 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
C9orf3-206ENST00000428313 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
C9orf3-206ENST00000428313 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 46.3 ms