RNA–Protein interactions for RNA: ENST00000428135.7

SNX13-203, Transcript of sorting nexin 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX13, Length 6,357 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-203ENST00000428135 KRTAP19-6Q3LI70 58 aa3.22□□□□□ -1.89
SNX13-203ENST00000428135 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.9
SNX13-203ENST00000428135 KRTAP9-7A8MTY7 169 aa3.2□□□□□ -1.9
SNX13-203ENST00000428135 KRTAP19-4Q3LI73 84 aa3.18□□□□□ -1.9
SNX13-203ENST00000428135 LOC100996750A0A140TA64 210 aa3.17□□□□□ -1.9
SNX13-203ENST00000428135 KRTAP4-3Q9BYR4 195 aa3.17□□□□□ -1.9
SNX13-203ENST00000428135 MT1LQ93083 61 aa3.16□□□□□ -1.9
SNX13-203ENST00000428135 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
SNX13-203ENST00000428135 SYNE2Q8WXH0 6885 aaKnown RBP3.15□□□□□ -1.9
SNX13-203ENST00000428135 MT1EP04732 61 aa3.15□□□□□ -1.91
SNX13-203ENST00000428135 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.08□□□□□ -1.92
SNX13-203ENST00000428135 MT1MQ8N339 61 aa3.07□□□□□ -1.92
SNX13-203ENST00000428135 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
SNX13-203ENST00000428135 KRTAP20-1Q3LI63 56 aa3.06□□□□□ -1.92
SNX13-203ENST00000428135 SPRR5A0A1B0GTR4 108 aa3.06□□□□□ -1.92
SNX13-203ENST00000428135 SYNE1Q8NF91 8797 aaKnown RBP3.03□□□□□ -1.92
SNX13-203ENST00000428135 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
SNX13-203ENST00000428135 LCE1DQ5T752 114 aa3.01□□□□□ -1.93
SNX13-203ENST00000428135 KRTAP4-9Q9BYQ8 210 aa2.98□□□□□ -1.93
SNX13-203ENST00000428135 MT3P25713 68 aa2.95□□□□□ -1.94
SNX13-203ENST00000428135 USH2AO75445 5202 aa2.94□□□□□ -1.94
SNX13-203ENST00000428135 KRTAP6-3Q3LI67 103 aa2.94□□□□□ -1.94
SNX13-203ENST00000428135 KRTAP19-7Q3SYF9 63 aa2.92□□□□□ -1.94
SNX13-203ENST00000428135 PRM1P04553 51 aa2.9□□□□□ -1.95
SNX13-203ENST00000428135 KMT2DO14686 5537 aa2.88□□□□□ -1.95
SNX13-203ENST00000428135 KRTAP2-3P0C7H8 128 aa2.87□□□□□ -1.95
SNX13-203ENST00000428135 KRTAP2-4Q9BYR9 128 aa2.87□□□□□ -1.95
SNX13-203ENST00000428135 MACF1Q9UPN3 7388 aaKnown RBP2.87□□□□□ -1.95
SNX13-203ENST00000428135 DSTQ03001 7570 aaKnown RBP2.87□□□□□ -1.95
SNX13-203ENST00000428135 LCE1AQ5T7P2 110 aa2.83□□□□□ -1.96
SNX13-203ENST00000428135 LCE5AQ5TCM9 118 aa2.83□□□□□ -1.96
SNX13-203ENST00000428135 OBSCNQ5VST9 7968 aa2.81□□□□□ -1.96
SNX13-203ENST00000428135 FCGBPQ9Y6R7 5405 aaPredicted RBP2.81□□□□□ -1.96
SNX13-203ENST00000428135 KRTAP2-2Q9BYT5 123 aa2.78□□□□□ -1.96
SNX13-203ENST00000428135 KRTAP2-1Q9BYU5 128 aa2.78□□□□□ -1.96
SNX13-203ENST00000428135 MT1AP04731 61 aa2.77□□□□□ -1.97
SNX13-203ENST00000428135 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
SNX13-203ENST00000428135 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
SNX13-203ENST00000428135 SSPOA2VEC9 5147 aa2.66□□□□□ -1.98
SNX13-203ENST00000428135 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
SNX13-203ENST00000428135 MUC12Q9UKN1 5478 aa2.66□□□□□ -1.98
SNX13-203ENST00000428135 NEBP20929 6669 aa2.63□□□□□ -1.99
SNX13-203ENST00000428135 LCE4AQ5TA78 99 aa2.62□□□□□ -1.99
SNX13-203ENST00000428135 KRTAP9-4Q9BYQ2 154 aa2.6□□□□□ -1.99
SNX13-203ENST00000428135 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
SNX13-203ENST00000428135 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
SNX13-203ENST00000428135 LCE1FQ5T754 118 aa2.59□□□□□ -1.99
SNX13-203ENST00000428135 KRTAP4-6Q9BYQ5 205 aa2.51□□□□□ -2.01
SNX13-203ENST00000428135 MDN1Q9NU22 5596 aa2.5□□□□□ -2.01
SNX13-203ENST00000428135 KRTAP5-9P26371 169 aa2.49□□□□□ -2.01
SNX13-203ENST00000428135 KRTAP9-9Q9BYP9 154 aa2.37□□□□□ -2.03
SNX13-203ENST00000428135 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
SNX13-203ENST00000428135 GPR98Q8WXG9 6306 aa2.23□□□□□ -2.05
SNX13-203ENST00000428135 KRTAP4-11Q9BYQ6 195 aa2.21□□□□□ -2.06
SNX13-203ENST00000428135 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
SNX13-203ENST00000428135 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
SNX13-203ENST00000428135 KRTAP4-4Q9BYR3 166 aa2.21□□□□□ -2.06
SNX13-203ENST00000428135 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
SNX13-203ENST00000428135 KRTAP5-4Q6L8H1 288 aa2.12□□□□□ -2.07
SNX13-203ENST00000428135 KRTAP5-3Q6L8H2 238 aa2.05□□□□□ -2.08
SNX13-203ENST00000428135 MUC5ACP98088 5654 aa2.04□□□□□ -2.08
SNX13-203ENST00000428135 KRTAP5-5Q701N2 237 aaPredicted RBP1.98□□□□□ -2.09
SNX13-203ENST00000428135 HMCN1Q96RW7 5635 aa1.93□□□□□ -2.1
SNX13-203ENST00000428135 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
SNX13-203ENST00000428135 AHNAK2Q8IVF2 5795 aa1.79□□□□□ -2.12
SNX13-203ENST00000428135 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.12
SNX13-203ENST00000428135 KRTAP5-2Q701N4 177 aa1.71□□□□□ -2.14
SNX13-203ENST00000428135 PHGR1C9JFL3 82 aa1.65□□□□□ -2.14
SNX13-203ENST00000428135 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
SNX13-203ENST00000428135 KRTAP5-10Q6L8G5 202 aa1.57□□□□□ -2.16
SNX13-203ENST00000428135 KRTAP5-1Q6L8H4 278 aa1.54□□□□□ -2.16
SNX13-203ENST00000428135 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
SNX13-203ENST00000428135 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
SNX13-203ENST00000428135 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
SNX13-203ENST00000428135 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
SNX13-203ENST00000428135 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
SNX13-203ENST00000428135 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 102.5 ms