RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DMAC1Q96GE9 116 aa1.11□□□□□ -2.23
VPS13A-208ENST00000423463 H0YAA0 97 aa1.11□□□□□ -2.23
VPS13A-208ENST00000423463 CCDC179H3BU77 68 aa1.11□□□□□ -2.23
VPS13A-208ENST00000423463 CRIPTQ9P021 101 aa1.11□□□□□ -2.23
VPS13A-208ENST00000423463 ACYP2P14621 99 aa1.1□□□□□ -2.23
VPS13A-208ENST00000423463 SPRR2GQ9BYE4 73 aa1.1□□□□□ -2.23
VPS13A-208ENST00000423463 KRTAP19-6Q3LI70 58 aa1.09□□□□□ -2.23
VPS13A-208ENST00000423463 CYSTM1Q9H1C7 97 aa1.09□□□□□ -2.23
VPS13A-208ENST00000423463 KRTAP19-8Q3LI54 63 aa1.09□□□□□ -2.23
VPS13A-208ENST00000423463 SPTSSBQ8NFR3 76 aa1.09□□□□□ -2.23
VPS13A-208ENST00000423463 H7BZZ5 65 aa1.08□□□□□ -2.24
VPS13A-208ENST00000423463 Q5VV11 94 aa1.08□□□□□ -2.24
VPS13A-208ENST00000423463 ADM2Q7Z4H4 148 aa1.08□□□□□ -2.24
VPS13A-208ENST00000423463 CHKB-CPT1BH3BT56 60 aa1.08□□□□□ -2.24
VPS13A-208ENST00000423463 MT1BP07438 61 aa1.08□□□□□ -2.24
VPS13A-208ENST00000423463 R4GN34 69 aa1.07□□□□□ -2.24
VPS13A-208ENST00000423463 USH2AO75445 5202 aa1.07□□□□□ -2.24
VPS13A-208ENST00000423463 P0C880 135 aa1.06□□□□□ -2.24
VPS13A-208ENST00000423463 K7ERS5 55 aa1.06□□□□□ -2.24
VPS13A-208ENST00000423463 TMEM258P61165 79 aa1.06□□□□□ -2.24
VPS13A-208ENST00000423463 A6NN06 94 aa1.05□□□□□ -2.24
VPS13A-208ENST00000423463 ATP5EP56381 51 aaPredicted RBP1.05□□□□□ -2.24
VPS13A-208ENST00000423463 COA5Q86WW8 74 aa1.05□□□□□ -2.24
VPS13A-208ENST00000423463 M0QZ58 72 aa1.05□□□□□ -2.24
VPS13A-208ENST00000423463 PLAC4Q8WY50 150 aa1.05□□□□□ -2.24
VPS13A-208ENST00000423463 KRTAP25-1Q3LHN0 102 aa1.03□□□□□ -2.24
VPS13A-208ENST00000423463 PRO2289Q9P1D8 64 aa1.03□□□□□ -2.24
VPS13A-208ENST00000423463 SERP1Q9Y6X1 66 aa1.03□□□□□ -2.24
VPS13A-208ENST00000423463 LINC01554Q52M75 96 aa1.02□□□□□ -2.25
VPS13A-208ENST00000423463 A0A1B0GU33 70 aa1.02□□□□□ -2.25
VPS13A-208ENST00000423463 KRTAP12-3P60328 96 aa1.02□□□□□ -2.25
VPS13A-208ENST00000423463 MT1XP80297 61 aa1.02□□□□□ -2.25
VPS13A-208ENST00000423463 A6NED7 52 aa1□□□□□ -2.25
VPS13A-208ENST00000423463 A0A1B0GU69 56 aa1□□□□□ -2.25
VPS13A-208ENST00000423463 KRTAP13-4Q3LI77 160 aa1□□□□□ -2.25
VPS13A-208ENST00000423463 LINC01558Q9Y6Z2 57 aa0.99□□□□□ -2.25
VPS13A-208ENST00000423463 RPS28P62857 69 aaKnown RBP0.99□□□□□ -2.25
VPS13A-208ENST00000423463 PRR15LQ9BU68 103 aa0.99□□□□□ -2.25
VPS13A-208ENST00000423463 SPATA8Q6RVD6 105 aa0.98□□□□□ -2.25
VPS13A-208ENST00000423463 A0A0D9SG42 100 aa0.98□□□□□ -2.25
VPS13A-208ENST00000423463 KRTAP12-4P60329 112 aa0.97□□□□□ -2.25
VPS13A-208ENST00000423463 Q1T7F1 81 aa0.97□□□□□ -2.25
VPS13A-208ENST00000423463 KRTAP8-1Q8IUC2 63 aa0.97□□□□□ -2.25
VPS13A-208ENST00000423463 KRTAP12-1P59990 96 aa0.96□□□□□ -2.26
VPS13A-208ENST00000423463 UQCR11O14957 56 aa0.95□□□□□ -2.26
VPS13A-208ENST00000423463 SPRR2FQ96RM1 72 aa0.95□□□□□ -2.26
VPS13A-208ENST00000423463 MIR22HGQ0VDD5 57 aa0.95□□□□□ -2.26
VPS13A-208ENST00000423463 SPRR2EP22531 72 aa0.93□□□□□ -2.26
VPS13A-208ENST00000423463 SPRR2BP35325 72 aa0.93□□□□□ -2.26
VPS13A-208ENST00000423463 SPRR2AP35326 72 aa0.93□□□□□ -2.26
VPS13A-208ENST00000423463 TNP1P09430 55 aa0.92□□□□□ -2.26
VPS13A-208ENST00000423463 C10orf95Q9H7T3 257 aa0.92□□□□□ -2.26
VPS13A-208ENST00000423463 KRTAP21-2Q3LI59 83 aa0.92□□□□□ -2.26
VPS13A-208ENST00000423463 CDC42SE1Q9NRR8 79 aa0.92□□□□□ -2.26
VPS13A-208ENST00000423463 BRK1Q8WUW1 75 aa0.91□□□□□ -2.26
VPS13A-208ENST00000423463 SPRR2DP22532 72 aa0.9□□□□□ -2.26
VPS13A-208ENST00000423463 KRTAP19-7Q3SYF9 63 aa0.9□□□□□ -2.26
VPS13A-208ENST00000423463 MT1EP04732 61 aa0.9□□□□□ -2.27
VPS13A-208ENST00000423463 KRTAP19-5Q3LI72 72 aa0.89□□□□□ -2.27
VPS13A-208ENST00000423463 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
VPS13A-208ENST00000423463 MT1GP13640 62 aa0.88□□□□□ -2.27
VPS13A-208ENST00000423463 KRTAP19-3Q7Z4W3 81 aa0.88□□□□□ -2.27
VPS13A-208ENST00000423463 MUC12Q9UKN1 5478 aa0.87□□□□□ -2.27
VPS13A-208ENST00000423463 MT1LQ93083 61 aa0.87□□□□□ -2.27
VPS13A-208ENST00000423463 ROMO1P60602 79 aa0.86□□□□□ -2.27
VPS13A-208ENST00000423463 PMAIP1Q13794 54 aa0.85□□□□□ -2.27
VPS13A-208ENST00000423463 MT1MQ8N339 61 aa0.85□□□□□ -2.27
VPS13A-208ENST00000423463 KTN1-AS1Q86SY8 53 aa0.8□□□□□ -2.28
VPS13A-208ENST00000423463 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
VPS13A-208ENST00000423463 MT4P47944 62 aa0.78□□□□□ -2.29
VPS13A-208ENST00000423463 MT1AP04731 61 aa0.74□□□□□ -2.29
VPS13A-208ENST00000423463 KRTAP20-2Q3LI61 65 aa0.74□□□□□ -2.29
VPS13A-208ENST00000423463 SYNE1Q8NF91 8797 aaKnown RBP0.73□□□□□ -2.29
VPS13A-208ENST00000423463 KRTAP6-1Q3LI64 71 aa0.73□□□□□ -2.29
VPS13A-208ENST00000423463 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
VPS13A-208ENST00000423463 INE1O15225 51 aa0.65□□□□□ -2.31
VPS13A-208ENST00000423463 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
VPS13A-208ENST00000423463 PRM1P04553 51 aa0.45□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 26.6 ms