RNA–Protein interactions for RNA: ENST00000423048.5

ALMS1-201, Transcript of ALMS1, centrosome and basal body associated protein, humanhuman

TSL 1 (best)

Gene ALMS1, Length 5,194 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-201ENST00000423048 MT1MQ8N339 61 aa2.34□□□□□ -2.04
ALMS1-201ENST00000423048 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
ALMS1-201ENST00000423048 STARD9Q9P2P6 4700 aa2.33□□□□□ -2.04
ALMS1-201ENST00000423048 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
ALMS1-201ENST00000423048 RNF213Q63HN8 5207 aa2.32□□□□□ -2.04
ALMS1-201ENST00000423048 TNXBP22105 4242 aa2.32□□□□□ -2.04
ALMS1-201ENST00000423048 SVEP1Q4LDE5 3571 aa2.32□□□□□ -2.04
ALMS1-201ENST00000423048 MT1AP04731 61 aa2.3□□□□□ -2.04
ALMS1-201ENST00000423048 NEBP20929 6669 aa2.3□□□□□ -2.04
ALMS1-201ENST00000423048 MT3P25713 68 aa2.3□□□□□ -2.04
ALMS1-201ENST00000423048 KMT2AQ03164 3969 aa2.27□□□□□ -2.05
ALMS1-201ENST00000423048 LCE3BQ5TA77 95 aa2.23□□□□□ -2.05
ALMS1-201ENST00000423048 FAT4Q6V0I7 4981 aa2.21□□□□□ -2.06
ALMS1-201ENST00000423048 LYSTQ99698 3801 aa2.2□□□□□ -2.06
ALMS1-201ENST00000423048 FSIP2Q5CZC0 6907 aa2.18□□□□□ -2.06
ALMS1-201ENST00000423048 HMCN2Q8NDA2 5059 aa2.18□□□□□ -2.06
ALMS1-201ENST00000423048 FLGP20930 4061 aaPredicted RBP2.17□□□□□ -2.06
ALMS1-201ENST00000423048 MACF1Q9UPN3 7388 aaKnown RBP2.17□□□□□ -2.06
ALMS1-201ENST00000423048 KRTAP19-7Q3SYF9 63 aa2.16□□□□□ -2.06
ALMS1-201ENST00000423048 LCE4AQ5TA78 99 aa2.13□□□□□ -2.07
ALMS1-201ENST00000423048 CSMD3Q7Z407 3707 aa2.11□□□□□ -2.07
ALMS1-201ENST00000423048 KRTAP4-8A0A0G2JLE6 195 aa2.09□□□□□ -2.08
ALMS1-201ENST00000423048 KRTAP4-8Q9BYQ9 185 aa2.09□□□□□ -2.08
ALMS1-201ENST00000423048 LPAP08519 4548 aa2.09□□□□□ -2.08
ALMS1-201ENST00000423048 LCE5AQ5TCM9 118 aa2.05□□□□□ -2.08
ALMS1-201ENST00000423048 MT4P47944 62 aa2.05□□□□□ -2.08
ALMS1-201ENST00000423048 SSPOA2VEC9 5147 aa2.04□□□□□ -2.08
ALMS1-201ENST00000423048 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
ALMS1-201ENST00000423048 USH2AO75445 5202 aa2□□□□□ -2.09
ALMS1-201ENST00000423048 PRM1P04553 51 aa1.97□□□□□ -2.09
ALMS1-201ENST00000423048 KRTAP4-9Q9BYQ8 210 aa1.96□□□□□ -2.1
ALMS1-201ENST00000423048 KRTAP5-9P26371 169 aa1.96□□□□□ -2.1
ALMS1-201ENST00000423048 MUC2Q02817 5179 aa1.94□□□□□ -2.1
ALMS1-201ENST00000423048 KMT2DO14686 5537 aa1.91□□□□□ -2.1
ALMS1-201ENST00000423048 KRTAP9-9Q9BYP9 154 aa1.91□□□□□ -2.1
ALMS1-201ENST00000423048 KRTAP4-7Q9BYR0 210 aa1.88□□□□□ -2.11
ALMS1-201ENST00000423048 HMCN1Q96RW7 5635 aa1.85□□□□□ -2.11
ALMS1-201ENST00000423048 LOC100996750A0A140TA64 210 aa1.84□□□□□ -2.11
ALMS1-201ENST00000423048 KRTAP4-6Q9BYQ5 205 aa1.84□□□□□ -2.11
ALMS1-201ENST00000423048 KRTAP6-1Q3LI64 71 aa1.84□□□□□ -2.12
ALMS1-201ENST00000423048 FCGBPQ9Y6R7 5405 aaPredicted RBP1.83□□□□□ -2.12
ALMS1-201ENST00000423048 KRTAP9-6A8MVA2 160 aa1.83□□□□□ -2.12
ALMS1-201ENST00000423048 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
ALMS1-201ENST00000423048 LCE1DQ5T752 114 aa1.82□□□□□ -2.12
ALMS1-201ENST00000423048 KRTAP6-2Q3LI66 62 aa1.8□□□□□ -2.12
ALMS1-201ENST00000423048 MDN1Q9NU22 5596 aa1.79□□□□□ -2.12
ALMS1-201ENST00000423048 KRTAP5-7Q6L8G8 165 aa1.76□□□□□ -2.13
ALMS1-201ENST00000423048 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
ALMS1-201ENST00000423048 KRTAP4-3Q9BYR4 195 aa1.75□□□□□ -2.13
ALMS1-201ENST00000423048 KRTAP5-3Q6L8H2 238 aa1.75□□□□□ -2.13
ALMS1-201ENST00000423048 LCE1EQ5T753 118 aa1.75□□□□□ -2.13
ALMS1-201ENST00000423048 KRTAP4-12Q9BQ66 201 aa1.73□□□□□ -2.13
ALMS1-201ENST00000423048 LCE1BQ5T7P3 118 aa1.71□□□□□ -2.14
ALMS1-201ENST00000423048 KRTAP5-4Q6L8H1 288 aa1.7□□□□□ -2.14
ALMS1-201ENST00000423048 DSTQ03001 7570 aaKnown RBP1.69□□□□□ -2.14
ALMS1-201ENST00000423048 KRTAP5-5Q701N2 237 aaPredicted RBP1.64□□□□□ -2.15
ALMS1-201ENST00000423048 KRTAP5-10Q6L8G5 202 aa1.63□□□□□ -2.15
ALMS1-201ENST00000423048 KRTAP20-2Q3LI61 65 aa1.61□□□□□ -2.15
ALMS1-201ENST00000423048 KRTAP4-2Q9BYR5 136 aa1.59□□□□□ -2.16
ALMS1-201ENST00000423048 KRTAP4-11Q9BYQ6 195 aa1.58□□□□□ -2.16
ALMS1-201ENST00000423048 SYNE1Q8NF91 8797 aaKnown RBP1.54□□□□□ -2.16
ALMS1-201ENST00000423048 LCE1FQ5T754 118 aa1.54□□□□□ -2.16
ALMS1-201ENST00000423048 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
ALMS1-201ENST00000423048 LCE1CQ5T751 118 aa1.5□□□□□ -2.17
ALMS1-201ENST00000423048 KRTAP5-2Q701N4 177 aa1.44□□□□□ -2.18
ALMS1-201ENST00000423048 KRTAP5-8O75690 187 aa1.43□□□□□ -2.18
ALMS1-201ENST00000423048 MUC5ACP98088 5654 aa1.42□□□□□ -2.18
ALMS1-201ENST00000423048 MUC12Q9UKN1 5478 aa1.41□□□□□ -2.18
ALMS1-201ENST00000423048 PHGR1C9JFL3 82 aa1.37□□□□□ -2.19
ALMS1-201ENST00000423048 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
ALMS1-201ENST00000423048 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.32□□□□□ -2.2
ALMS1-201ENST00000423048 KRTAP5-11Q6L8G4 156 aa1.29□□□□□ -2.2
ALMS1-201ENST00000423048 KRTAP5-1Q6L8H4 278 aa1.2□□□□□ -2.22
ALMS1-201ENST00000423048 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
ALMS1-201ENST00000423048 KRTAP21-2Q3LI59 83 aa1.06□□□□□ -2.24
ALMS1-201ENST00000423048 MUC19Q7Z5P9 8384 aa0.99□□□□□ -2.25
ALMS1-201ENST00000423048 KRTAP4-4Q9BYR3 166 aa0.98□□□□□ -2.25
ALMS1-201ENST00000423048 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 100.2 ms