RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
CDH1-202ENST00000422392 KRTAP19-6Q3LI70 58 aa5.27□□□□□ -1.57
CDH1-202ENST00000422392 KRTAP4-3Q9BYR4 195 aa5.26□□□□□ -1.57
CDH1-202ENST00000422392 LOC100996750A0A140TA64 210 aa5.25□□□□□ -1.57
CDH1-202ENST00000422392 KRTAP19-4Q3LI73 84 aa5.24□□□□□ -1.57
CDH1-202ENST00000422392 MT1GP13640 62 aa5.16□□□□□ -1.58
CDH1-202ENST00000422392 DSTQ03001 7570 aaKnown RBP5.15□□□□□ -1.58
CDH1-202ENST00000422392 CRCT1Q9UGL9 99 aa5.11□□□□□ -1.59
CDH1-202ENST00000422392 MT1MQ8N339 61 aa5.09□□□□□ -1.59
CDH1-202ENST00000422392 KRTAP19-3Q7Z4W3 81 aa5.07□□□□□ -1.6
CDH1-202ENST00000422392 SPRR2FQ96RM1 72 aa4.93□□□□□ -1.62
CDH1-202ENST00000422392 MACF1Q9UPN3 7388 aaKnown RBP4.9□□□□□ -1.63
CDH1-202ENST00000422392 LCE5AQ5TCM9 118 aa4.89□□□□□ -1.63
CDH1-202ENST00000422392 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
CDH1-202ENST00000422392 SYNE1Q8NF91 8797 aaKnown RBP4.8□□□□□ -1.64
CDH1-202ENST00000422392 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
CDH1-202ENST00000422392 MDN1Q9NU22 5596 aa4.79□□□□□ -1.64
CDH1-202ENST00000422392 SYNE2Q8WXH0 6885 aaKnown RBP4.78□□□□□ -1.64
CDH1-202ENST00000422392 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
CDH1-202ENST00000422392 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
CDH1-202ENST00000422392 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
CDH1-202ENST00000422392 MT1AP04731 61 aa4.54□□□□□ -1.68
CDH1-202ENST00000422392 LCE3DQ9BYE3 92 aa4.47□□□□□ -1.69
CDH1-202ENST00000422392 KRTAP5-5Q701N2 237 aaPredicted RBP4.46□□□□□ -1.7
CDH1-202ENST00000422392 KRTAP9-2Q9BYQ4 174 aa4.46□□□□□ -1.7
CDH1-202ENST00000422392 KRTAP5-9P26371 169 aa4.45□□□□□ -1.7
CDH1-202ENST00000422392 SPRR2EP22531 72 aa4.44□□□□□ -1.7
CDH1-202ENST00000422392 SPRR2BP35325 72 aa4.44□□□□□ -1.7
CDH1-202ENST00000422392 SPRR2AP35326 72 aa4.44□□□□□ -1.7
CDH1-202ENST00000422392 OBSCNQ5VST9 7968 aa4.43□□□□□ -1.7
CDH1-202ENST00000422392 LCE3EQ5T5B0 92 aa4.39□□□□□ -1.71
CDH1-202ENST00000422392 KRTAP9-7A8MTY7 169 aa4.37□□□□□ -1.71
CDH1-202ENST00000422392 PRM1P04553 51 aa4.28□□□□□ -1.72
CDH1-202ENST00000422392 KRTAP9-4Q9BYQ2 154 aa4.28□□□□□ -1.72
CDH1-202ENST00000422392 SPRR2DP22532 72 aa4.23□□□□□ -1.73
CDH1-202ENST00000422392 KRTAP6-2Q3LI66 62 aa4.18□□□□□ -1.74
CDH1-202ENST00000422392 MT3P25713 68 aa4.07□□□□□ -1.76
CDH1-202ENST00000422392 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.02□□□□□ -1.77
CDH1-202ENST00000422392 KRTAP6-3Q3LI67 103 aa4.01□□□□□ -1.77
CDH1-202ENST00000422392 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
CDH1-202ENST00000422392 KRTAP4-6Q9BYQ5 205 aa3.84□□□□□ -1.79
CDH1-202ENST00000422392 MT4P47944 62 aa3.81□□□□□ -1.8
CDH1-202ENST00000422392 NEBP20929 6669 aa3.76□□□□□ -1.81
CDH1-202ENST00000422392 KRTAP9-6A0A140TA67 174 aa3.72□□□□□ -1.81
CDH1-202ENST00000422392 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
CDH1-202ENST00000422392 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
CDH1-202ENST00000422392 LCE4AQ5TA78 99 aa3.68□□□□□ -1.82
CDH1-202ENST00000422392 HMCN1Q96RW7 5635 aa3.66□□□□□ -1.82
CDH1-202ENST00000422392 KRTAP5-2Q701N4 177 aa3.63□□□□□ -1.83
CDH1-202ENST00000422392 MUC5ACP98088 5654 aa3.56□□□□□ -1.84
CDH1-202ENST00000422392 KRTAP9-9Q9BYP9 154 aa3.54□□□□□ -1.84
CDH1-202ENST00000422392 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
CDH1-202ENST00000422392 KRTAP4-12Q9BQ66 201 aa3.53□□□□□ -1.84
CDH1-202ENST00000422392 LCE1DQ5T752 114 aa3.52□□□□□ -1.85
CDH1-202ENST00000422392 KRTAP5-3Q6L8H2 238 aa3.48□□□□□ -1.85
CDH1-202ENST00000422392 KRTAP20-1Q3LI63 56 aa3.39□□□□□ -1.87
CDH1-202ENST00000422392 LCE1BQ5T7P3 118 aa3.37□□□□□ -1.87
CDH1-202ENST00000422392 LCE1EQ5T753 118 aa3.29□□□□□ -1.88
CDH1-202ENST00000422392 KRTAP5-10Q6L8G5 202 aa3.26□□□□□ -1.89
CDH1-202ENST00000422392 KRTAP4-11Q9BYQ6 195 aa3.26□□□□□ -1.89
CDH1-202ENST00000422392 KRTAP5-1Q6L8H4 278 aa3.18□□□□□ -1.9
CDH1-202ENST00000422392 KRTAP4-2Q9BYR5 136 aa3.17□□□□□ -1.9
CDH1-202ENST00000422392 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
CDH1-202ENST00000422392 KRTAP21-2Q3LI59 83 aa2.99□□□□□ -1.93
CDH1-202ENST00000422392 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.91□□□□□ -1.94
CDH1-202ENST00000422392 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
CDH1-202ENST00000422392 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.96
CDH1-202ENST00000422392 AHNAK2Q8IVF2 5795 aa2.81□□□□□ -1.96
CDH1-202ENST00000422392 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
CDH1-202ENST00000422392 KRTAP5-7Q6L8G8 165 aa2.77□□□□□ -1.97
CDH1-202ENST00000422392 MUC5BQ9HC84 5762 aaPredicted RBP2.76□□□□□ -1.97
CDH1-202ENST00000422392 KRTAP5-11Q6L8G4 156 aa2.66□□□□□ -1.98
CDH1-202ENST00000422392 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
CDH1-202ENST00000422392 GPR98Q8WXG9 6306 aa2.33□□□□□ -2.04
CDH1-202ENST00000422392 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
CDH1-202ENST00000422392 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
CDH1-202ENST00000422392 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 13.3 ms